Browse Element(s) Details


Os.5324.1.S1_at

Description gb:AY166458.1
DB_XREF= gi:27362856
TID=Os.5324.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5324 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) alpha-amylasesubtilisin inhibitor mRNA, complete cds.
PROD=alpha-amylasesubtilisin inhibitor
FL= gb:AY166458.1 gb:AK106723.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4447011/11Alpha-amylase/subtilisin inhibitor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44430Os.25524.1.S1_at11/114+26081183..26088576transporter, putative, expressed
LOC_Os04g44440Os.52097.1.S1_at11/114+26091520..26092590TCP family transcription factor containing protein, expressed
LOC_Os04g44450OsAffx.14265.1.S1_at11/114+26098419..26099927hypothetical protein
LOC_Os04g44460OsAffx.26460.1.S1_at11/114+26101366..26102406Sulfotransferase domain containing protein, expressed
LOC_Os04g44470Os.5324.1.S1_at11/114+26104765..26105721Alpha-amylase/subtilisin inhibitor, putative, expressed
LOC_Os04g44480NANA4+26107320..26113457retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_x_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.1.S1_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.3.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.5.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44500Os.12986.1.S1_at11/114+26123360..26124697GRAM domain containing protein, expressed
LOC_Os04g44510Os.7622.1.S1_at11/114+26128239..26129416GRAM domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004866molecular_functionendopeptidase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5324.1.S1_at--331--2611Chr04:26105323..26105347 (25 bp)
AACGCCGCGACGATCTGCGTGCAGT
LOC_Os04g44470
Os.5324.1.S1_at--638--6411Chr04:26105312..26105336 (25 bp)
GATCTGCGTGCAGTCCACCGAGTGG
LOC_Os04g44470
Os.5324.1.S1_at--235--2611Chr04:26105206..26105230 (25 bp)
AACGCGTTCCGCGTGGAGAAGTACG
LOC_Os04g44470
Os.5324.1.S1_at--35--4471Chr04:26105087..26105111 (25 bp)
GCCTCACGTCGTGGTCTTCAAGAAG
LOC_Os04g44470
Os.5324.1.S1_at--673--851Chr04:26105059..26105083 (25 bp)
AGGCCAAGCCCACCAGAGTAAACGA
LOC_Os04g44470
Os.5324.1.S1_at--1113--8591Chr04:26104989..26105013 (25 bp)
TGGTGCCTCTGTAGCGTGTATAGGT
LOC_Os04g44470
Os.5324.1.S1_at--53--931Chr04:26104914..26104938 (25 bp)
AGGCTAGCAGGTATTGCTCCGTGGT
LOC_Os04g44470
Os.5324.1.S1_at--36--7911Chr04:26104892..26104916 (25 bp)
GGTTCTGTTCTCATGGTCGTGTCAT
LOC_Os04g44470
Os.5324.1.S1_at--261--3511Chr04:26104881..26104905 (25 bp)
CATGGTCGTGTCATGTCTGTTAGTC
LOC_Os04g44470
Os.5324.1.S1_at--162--8911Chr04:26104838..26104862 (25 bp)
TGAGCAAGTGAGCAGGACTGCCTCT
LOC_Os04g44470
Os.5324.1.S1_at--82--4731Chr04:26104812..26104836 (25 bp)
GCTGTCTGGCCCAGCCGGACTTGTT
LOC_Os04g44470
Target Sequence 
AACGCCGCGACGATCTGCGTGCAGTCCACCGAGTGGCATGTCGGCGACGAGCCGCTCACGGGGGCGCGGCGCGTGGTGAC
GGGGCCGTTGATCGGGCCGAGCCCGAGCGGGCGGGAGAACGCGTTCCGCGTGGAGAAGTACGGCGGTGGGTACAAGCTGG
TGTCGTGCAGGGACTCGTGCCAGGACCTGGGCGTGTCAAGGGACGGCGCGCGGGCGTGGCTGGGCGCGAGCCAGCCGCCT
CACGTCGTGGTCTTCAAGAAGGCCAGGCCAAGCCCACCAGAGTAAACGAGGGGAGGGGAGGGGGGGGGGGTCACTCATGC
GTTGCGTGGTGCGGTGGTGCCTCTGTAGCGTGTATAGGTAGTAGGGTGCGTGCGTGCGTGCGCATGTGCTGGTTGAATAA
TGTGTGAAGAGGCTAGCAGGTATTGCTCCGTGGTTCTGTTCTCATGGTCGTGTCATGTCTGTTAGTCGTGATAACTCGTG
AGCACNTGAGCAAGTGAGCAGGACTGCCTCTGGCTGTCTGGCCCAGCCGGACTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis