Browse Element(s) Details


Os.52097.1.S1_at

Description gb:AK064708.1
DB_XREF= gi:32974726
TID=Os.52097.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52097 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-B01, full insert sequence.
FL= gb:AK064708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4444011/11TCP family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44400Os.50580.1.S1_at11/114+26065574..26066794ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor, putative, expressed
LOC_Os04g44410Os.54573.1.S1_at11/114+26068479..26073053Serine carboxypeptidase family protein, expressed
LOC_Os04g44420OsAffx.26459.1.S1_at11/114+26077083..26077556isochorismatase family protein, expressed
LOC_Os04g44430Os.25524.1.S1_at11/114+26081183..26088576transporter, putative, expressed
LOC_Os04g44440Os.52097.1.S1_at11/114+26091520..26092590TCP family transcription factor containing protein, expressed
LOC_Os04g44450OsAffx.14265.1.S1_at11/114+26098419..26099927hypothetical protein
LOC_Os04g44460OsAffx.26460.1.S1_at11/114+26101366..26102406Sulfotransferase domain containing protein, expressed
LOC_Os04g44470Os.5324.1.S1_at11/114+26104765..26105721Alpha-amylase/subtilisin inhibitor, putative, expressed
LOC_Os04g44480NANA4+26107320..26113457retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_x_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.1.S1_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.3.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.5.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52097.1.S1_at--330--1551Chr04:26092203..26092227 (25 bp)
AGCTATGCAGCTCAATTTGCGACGT
LOC_Os04g44440
Os.52097.1.S1_at--260--10291Chr04:26092218..26092242 (25 bp)
TTTGCGACGTGATTGCATGCGCGCG
LOC_Os04g44440
Os.52097.1.S1_at--387--10251Chr04:26092252..26092276 (25 bp)
TTTGTACTTGGAGCTAGTCTTGCTT
LOC_Os04g44440
Os.52097.1.S1_at--527--3712Chr04:26092265..26092289 (25 bp)
CTAGTCTTGCTTTGTCTTGTGTGTA
LOC_Os04g44440
Os.52097.1.S1_at--261--8731Chr04:26092277..26092301 (25 bp)
TGTCTTGTGTGTATGGCTTGCCGTA
LOC_Os04g44440
Os.52097.1.S1_at--1071--10091Chr04:26092288..26092312 (25 bp)
TATGGCTTGCCGTACTTAATTTCCC
LOC_Os04g44440
Os.52097.1.S1_at--600--9751Chr04:26092304..26092328 (25 bp)
TAATTTCCCATTTCCGCTGGTGTTT
LOC_Os04g44440
Os.52097.1.S1_at--200--6851Chr04:26092325..26092349 (25 bp)
GTTTCCATGGGTGAATTTTGTGTGA
LOC_Os04g44440
Os.52097.1.S1_at--241--211Chr04:26092350..26092374 (25 bp)
ATTTGCTTGATTTTAGGCCGGAGAA
LOC_Os04g44440
Os.52097.1.S1_at--258--6491Chr04:26092414..26092438 (25 bp)
GATAGATCATCAGAGGCAGCAATTG
LOC_Os04g44440
Os.52097.1.S1_at--642--5051Chr04:26092429..26092453 (25 bp)
GCAGCAATTGTAGATACCAAGTCTT
LOC_Os04g44440
Target Sequence 
AGCTATGCAGCTCAATTTGCGACGTGATTGCATGCGCGCGCGGGGTTGATTTGTACTTGGAGCTAGTCTTGCTTTGTCTT
GTGTGTATGGCTTGCCGTACTTAATTTCCCATTTCCGCTGGTGTTTCCATGGGTGAATTTTGTGTGAATTTGCTTGATTT
TAGGCCGGAGAATACTAGTAAGTAGCTGGTGAAGAATCAAGAATGTGATCAGATAGATCATCAGAGGCAGCAATTGTAGA
TACCAAGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52097.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis