Browse Element(s) Details


Os.25524.1.S1_at

Description gb:AK065806.1
DB_XREF= gi:32975824
TID=Os.25524.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25524 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013039J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013039J23, full insert sequence.
FL= gb:AK065806.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4443011/11transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44380OsAffx.21308.2.S1_x_at1/114+26057963..26059095hypothetical protein
LOC_Os04g44390NANA4+26059728..26060489hypothetical protein
LOC_Os04g44400Os.50580.1.S1_at11/114+26065574..26066794ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor, putative, expressed
LOC_Os04g44410Os.54573.1.S1_at11/114+26068479..26073053Serine carboxypeptidase family protein, expressed
LOC_Os04g44420OsAffx.26459.1.S1_at11/114+26077083..26077556isochorismatase family protein, expressed
LOC_Os04g44430Os.25524.1.S1_at11/114+26081183..26088576transporter, putative, expressed
LOC_Os04g44440Os.52097.1.S1_at11/114+26091520..26092590TCP family transcription factor containing protein, expressed
LOC_Os04g44450OsAffx.14265.1.S1_at11/114+26098419..26099927hypothetical protein
LOC_Os04g44460OsAffx.26460.1.S1_at11/114+26101366..26102406Sulfotransferase domain containing protein, expressed
LOC_Os04g44470Os.5324.1.S1_at11/114+26104765..26105721Alpha-amylase/subtilisin inhibitor, putative, expressed
LOC_Os04g44480NANA4+26107320..26113457retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25524.1.S1_at--774--8051Chr04:26086552..26086576 (25 bp)
GGAGAGCTTTTGGTCTTTGCAACTC
LOC_Os04g44430
Os.25524.1.S1_at--741--1231Chr04:26086572..26087025 (25 bp)
AACTCAGGCCCCAGTAAACTATGTA
LOC_Os04g44430
Os.25524.1.S1_at--954--3751Chr04:26087117..26087137 (21 bp)
CTCTTGTTGGGCTTCTTCAGGACAA
LOC_Os04g44430
Os.25524.1.S1_at--342--8551Chr04:26087436..26087460 (25 bp)
TGGAGATCGACAGCTCTTACCTTGA
LOC_Os04g44430
Os.25524.1.S1_at--115--451Chr04:26087462..26087486 (25 bp)
ATCTATCCTCTTCATTGCAGCTATA
LOC_Os04g44430
Os.25524.1.S1_at--1021--11Chr04:26088231..26088252 (22 bp)
ATTGGCATATTTGTCCGTAGCGTTG
LOC_Os04g44430
Os.25524.1.S1_at--1097--1331Chr04:26088268..26088292 (25 bp)
AGAGTGAGCATGATGTCCCTGCCGT
LOC_Os04g44430
Os.25524.1.S1_at--687--6191Chr04:26088333..26088357 (25 bp)
GAGGCACGGGCATCTTAGTAATCTG
LOC_Os04g44430
Os.25524.1.S1_at--434--6951Chr04:26088387..26088411 (25 bp)
GTAGATTACTCTTGGCCGGATTATG
LOC_Os04g44430
Os.25524.1.S1_at--723--7931Chr04:26088404..26088428 (25 bp)
GGATTATGTCCATCACGCCAGGAAC
LOC_Os04g44430
Os.25524.1.S1_at--496--211Chr04:26088442..26088466 (25 bp)
ATTTGCATGTGTATCGGCTGTACCT
LOC_Os04g44430
Target Sequence 
GGAGAGCTTTTGGTCTTTGCAACTCAGGCCCCAGTAAACTATGTATGCCTTCATTGTGTAAAACCAAGTTTGCGGCCATT
ATCAATGGCTATGTCAACTGTTGCAATCCATATATTTGGTGATGTGCCTTCTTCACCTCTTGTTGGGCTTCTTCAGGACA
AAATCCATAACTGGAGATCGACAGCTCTTACCTTGACATCTATCCTCTTCATTGCAGCTATATTTTGGTTTATTGGCATA
TTTGTCCGTAGCGTTGATCGTTTCAACGAACAGAGTGAGCATGATGTCCCTGCCGTCGAGAGATCAAACCTCAGGCCATT
GCTCGATGAAAACGAAGAGGCACGGGCATCTTAGTAATCTGCGCAATCATTAAATCCGTGTNTTTCTCTTGTAGATTACT
CTTGGCCGGATTATGTCCATCACGCCAGGAACATGTGAAATGCAAATTTGCATGTGTATCGGCTGTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25524.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis