Browse Element(s) Details


OsAffx.26460.1.S1_at

Description tigr:9632.m04267
TID=OsAffx.26460.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sulfotransferase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4446011/11Sulfotransferase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44420OsAffx.26459.1.S1_at11/114+26077083..26077556isochorismatase family protein, expressed
LOC_Os04g44430Os.25524.1.S1_at11/114+26081183..26088576transporter, putative, expressed
LOC_Os04g44440Os.52097.1.S1_at11/114+26091520..26092590TCP family transcription factor containing protein, expressed
LOC_Os04g44450OsAffx.14265.1.S1_at11/114+26098419..26099927hypothetical protein
LOC_Os04g44460OsAffx.26460.1.S1_at11/114+26101366..26102406Sulfotransferase domain containing protein, expressed
LOC_Os04g44470Os.5324.1.S1_at11/114+26104765..26105721Alpha-amylase/subtilisin inhibitor, putative, expressed
LOC_Os04g44480NANA4+26107320..26113457retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_x_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.4.S1_at6/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.1.S1_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.3.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44490OsAffx.31869.5.S1_x_at3/114+26114230..26118848retrotransposon protein, putative, unclassified
LOC_Os04g44500Os.12986.1.S1_at11/114+26123360..26124697GRAM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008146molecular_functionsulfotransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26460.1.S1_at--363--4351Chr04:26101919..26101943 (25 bp)
CCAACAAGTTCAGGGCCCGTGAGGG
LOC_Os04g44460
OsAffx.26460.1.S1_at--791--3471Chr04:26102062..26102086 (25 bp)
CAGGTCCTCTTCTTCAGGTACGAGG
LOC_Os04g44460
OsAffx.26460.1.S1_at--566--4731Chr04:26102193..26102217 (25 bp)
GCTGTGCTCGTTCGATCACATGATC
LOC_Os04g44460
OsAffx.26460.1.S1_at--848--9371Chr04:26102204..26102228 (25 bp)
TCGATCACATGATCGGCCTGGAGGC
LOC_Os04g44460
OsAffx.26460.1.S1_at--1125--4371Chr04:26102231..26102255 (25 bp)
CCAAGAGCGGCAAGACGGAGCTCGT
LOC_Os04g44460
OsAffx.26460.1.S1_at--227--8251Chr04:26102260..26102284 (25 bp)
GGCACGGCGGCGAATAGCTCATTCT
LOC_Os04g44460
OsAffx.26460.1.S1_at--428--5231Chr04:26102271..26102295 (25 bp)
GAATAGCTCATTCTTCCGTCGCGGG
LOC_Os04g44460
OsAffx.26460.1.S1_at--694--4591Chr04:26102311..26102335 (25 bp)
GCGAACCATCTTTCGCCGGAGATTG
LOC_Os04g44460
OsAffx.26460.1.S1_at--1127--431Chr04:26102318..26102342 (25 bp)
ATCTTTCGCCGGAGATTGCACAGCG
LOC_Os04g44460
OsAffx.26460.1.S1_at--349--71Chr04:26102332..26102356 (25 bp)
ATTGCACAGCGGATCGACGCCATAA
LOC_Os04g44460
OsAffx.26460.1.S1_at--861--1811Chr04:26102348..26102372 (25 bp)
ACGCCATAACCGAGGCCAGGTTCAA
LOC_Os04g44460
Target Sequence 
CCAACAAGTTCAGGGCCCGTGAGGGGCAGGAGCCCATGTCGCCGGAGGCCATCGCCGAGCTGTTCTGCCTCGGCGTGTCG
CCGTCCGGGCCGTACTGGGACCACGTCCTCGGCTACTGGGGCGCGCACGTGGCGCGCCCCGAGCAGGTCCTCTTCTTCAG
GTACGAGGAGATGAAGCTCGACGCCGCGGCGCACGTCCGGAGGCTGGCGGAGTTCGTCGGCCTGCCGTTCAGCGCGGAGG
AGGAGGAAGGTGGCGTGGTGGACGCCATCGTCAGGCTGTGCTCGTTCGATCACATGATCGGCCTGGAGGCGACCAAGAGC
GGCAAGACGGAGCTCGTGGTCGGCACGGCGGCGAATAGCTCATTCTTCCGTCGCGGGCAGGTCGGGGACTGGGCGAACCA
TCTTTCGCCGGAGATTGCACAGCGGATCGACGCCATAACCGAGGCCAGGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26460.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis