Browse Element(s) Details


Os.54573.1.S1_at

Description gb:AK105830.1
DB_XREF= gi:32991039
TID=Os.54573.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54573 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-203-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-203-E06, full insert sequence.
FL= gb:AK105830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4441011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44354Os.49324.1.S1_at11/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44354Os.27292.1.A1_at10/114+26041372..26048347UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g44370OsAffx.21308.1.S1_at5/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370OsAffx.25367.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44370Os.20321.1.S1_at1/114+26049574..26055408retrotransposon, putative, centromere-specific
LOC_Os04g44380OsAffx.21308.2.S1_x_at1/114+26057963..26059095hypothetical protein
LOC_Os04g44390NANA4+26059728..26060489hypothetical protein
LOC_Os04g44400Os.50580.1.S1_at11/114+26065574..26066794ATP-dependent Clp protease proteolytic subunit, mitochondrial precursor, putative, expressed
LOC_Os04g44410Os.54573.1.S1_at11/114+26068479..26073053Serine carboxypeptidase family protein, expressed
LOC_Os04g44420OsAffx.26459.1.S1_at11/114+26077083..26077556isochorismatase family protein, expressed
LOC_Os04g44430Os.25524.1.S1_at11/114+26081183..26088576transporter, putative, expressed
LOC_Os04g44440Os.52097.1.S1_at11/114+26091520..26092590TCP family transcription factor containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0004187molecular_functioncarboxypeptidase D activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54573.1.S1_at--375--2831Chr04:26069139..26069163 (25 bp)
AAGTAAATGGAACGACTCGCCGTCG
LOC_Os04g44410
Os.54573.1.S1_at--428--4491Chr04:26069081..26069105 (25 bp)
GCCGGGCTGCGCATCTGGGTTTACA
LOC_Os04g44410
Os.54573.1.S1_at--277--1831Chr04:26068925..26068949 (25 bp)
ACGCGGTACAGCCTGAACACGATGA
LOC_Os04g44410
Os.54573.1.S1_at--1100--4371Chr04:26068636..26068660 (25 bp)
CCAAGTGCAGCCATAGCTTTGCTAA
LOC_Os04g44410
Os.54573.1.S1_at--2--1571Chr04:26068622..26068646 (25 bp)
AGCTTTGCTAACTTTGCTCGATTGG
LOC_Os04g44410
Os.54573.1.S1_at--14--2871Chr04:26068577..26068601 (25 bp)
AAGTGTGTAGCATTCCGTGAACAAT
LOC_Os04g44410
Os.54573.1.S1_at--102--8211Chr04:26068550..26068574 (25 bp)
GGAATTGTTGTTCTCGGCTGGTACA
LOC_Os04g44410
Os.54573.1.S1_at--320--8351Chr04:26068535..26068559 (25 bp)
GGCTGGTACAAGCACCCTCTGTAAC
LOC_Os04g44410
Os.54573.1.S1_at--474--7051Chr04:26068515..26068539 (25 bp)
GTAACCCGCATGCTACTACGGTTAT
LOC_Os04g44410
Os.54573.1.S1_at--235--3731Chr04:26068500..26068524 (25 bp)
CTACGGTTATCATACGCAGCAGTTG
LOC_Os04g44410
Os.54573.1.S1_at--1083--1831Chr04:26068487..26068511 (25 bp)
ACGCAGCAGTTGGAACCTTTACGTT
LOC_Os04g44410
Target Sequence 
AAGTAAATGGAACGACTCGCCGTCGACCGTGCTCCCCATCCTGAAGAAGCTCATGGGCGCCGGGCTGCGCATCTGGGTTT
ACAGCGGTGACACGGACGGGAGGGTGCCGGTGACGTCNACGCGGTACAGCCTGAACACGATGAAGCTGCGGCCGCGGCTG
ATGCGGAAGACCGCCGGCGATGGCGCCGGCGAAGAGTCGGAGTGGGGCGGGTGGCGCGCGTGGTACGACAGGCAGCAGGT
GGGCGGGTGGGCGGTGGAGTACGAGGAAGGCCTGACGCTGGTGACGGTGCGCGGCGCCGGGCACCAGGTGCCGCTCTTCG
CGCCCCGGCGGTCGCTCGCCATGCTCTACCACTTCCTCCGCGGCAGCTCGCTGCCCGCTTCGCGCTCCCGCTGATGAGCA
CTGCTGCCCAAGTGCAGCCATAGCTTTGCTAACTTTGCTCGATTGGATAGGGAAGGCAATGGTTTTAAGTGTGTAGCATT
CCGTGAACAATTGGGAATTGTTGTTCTCGGCTGGTACAAGCACCCTCTGTAACCCGCATGCTACTACGGTTATCATACGC
AGCAGTTGGAACCTTTACGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54573.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis