Browse Element(s) Details


Os.5325.1.S1_at

Description gb:AK107930.1
DB_XREF= gi:32993139
TID=Os.5325.1
CNT=12
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.5325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-135-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-135-A01, full insert sequence.
FL= gb:AK107930.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2387011/11Late embryogenesis abundant group 1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g23820OsAffx.29321.1.S1_at11/118+14292491..14292937hypothetical protein
LOC_Os08g23829OsAffx.29322.1.S1_x_at10/118+14298743..14300137hypothetical protein
LOC_Os08g23840NANA8+14302066..14305267retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23849OsAffx.29322.1.S1_x_at6/118+14306118..14306489hypothetical protein
LOC_Os08g23860NANA8+14308418..14311619retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g23870Os.5325.1.S1_at11/118+14317327..14318137Late embryogenesis abundant group 1 family protein, expressed
LOC_Os08g23880OsAffx.5908.1.S1_at11/118+14321366..14322709No apical meristem protein
LOC_Os08g23890OsAffx.25936.1.S1_s_at11/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23890OsAffx.25936.7.S1_s_at11/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23890OsAffx.25936.2.S1_x_at3/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23890OsAffx.25936.5.S1_x_at1/118+14326458..14329378transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23900NANA8+14331826..14332278hypothetical protein
LOC_Os08g23910Os.10827.1.S1_x_at11/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23910Os.46055.2.S1_x_at6/118+14332977..14337392transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g23920Os.20602.2.S1_x_at10/118+14340109..14342289hAT family dimerisation domain containing protein
LOC_Os08g23930Os.26442.1.S1_at11/118+14343073..14349437ENT domain containing protein, expressed
LOC_Os08g23930Os.57545.1.S1_x_at1/118+14343073..14349437ENT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5325.1.S1_at--1129--1891Chr08:14317815..14317839 (25 bp)
ACGTCGGCAGCGACTTCTCGCAGGC
LOC_Os08g23870
Os.5325.1.S1_at--554--8351Chr08:14317850..14317874 (25 bp)
GGCGGCCAGTACCAGTGATCTCATT
LOC_Os08g23870
Os.5325.1.S1_at--711--6971Chr08:14317858..14317882 (25 bp)
GTACCAGTGATCTCATTCTCATATC
LOC_Os08g23870
Os.5325.1.S1_at--1149--7391Chr08:14317864..14317888 (25 bp)
GTGATCTCATTCTCATATCAATGTG
LOC_Os08g23870
Os.5325.1.S1_at--277--7371Chr08:14317886..14317910 (25 bp)
GTGACAATTTATGATCTACTAGTAG
LOC_Os08g23870
Os.5325.1.S1_at--28--6431Chr08:14317898..14317922 (25 bp)
GATCTACTAGTAGCTGTTCATCAGT
LOC_Os08g23870
Os.5325.1.S1_at--89--6751Chr08:14317913..14317937 (25 bp)
GTTCATCAGTTCATGTAGAGTTCAC
LOC_Os08g23870
Os.5325.1.S1_at--185--1231Chr08:14317920..14317944 (25 bp)
AGTTCATGTAGAGTTCACTTCGCTA
LOC_Os08g23870
Os.5325.1.S1_at--826--3511Chr08:14317924..14317948 (25 bp)
CATGTAGAGTTCACTTCGCTACTAT
LOC_Os08g23870
Os.5325.1.S1_at--145--10771Chr08:14317968..14317992 (25 bp)
TTGTACGTGTTAGAAGTGGTATCAT
LOC_Os08g23870
Os.5325.1.S1_at--369--6891Chr08:14317986..14318010 (25 bp)
GTATCATGTTGTGGGAGATGCTTAA
LOC_Os08g23870
Target Sequence 
ACGTCGGCAGCGACTTCTCGCAGGCCCACGGCACCGGCGGCCAGTACCAGTGATCTCATTCTCATATCAATGTGACAATT
TATGATCTACTAGTAGCTGTTCATCAGTTCATGTAGAGTTCACTTCGCTACTATGAGTTGATGGGGAATAAAATTGTACG
TGTTAGAAGTGGTATCATGTTGTGGGAGATGCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis