Browse Element(s) Details


Os.53298.1.S1_at

Description gb:AK071871.1
DB_XREF= gi:32981894
TID=Os.53298.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53298 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118N18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118N18, full insert sequence.
FL= gb:AK071871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5966011/11Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59620Os.50460.1.S1_at11/113+33880629..33885081patatin, putative, expressed
LOC_Os03g59630NANA3+33891231..33892098hypothetical protein
LOC_Os03g59640Os.14194.1.S1_at10/113+33894227..33900896magnesium chelatase ATPase subunit D family protein, expressed
LOC_Os03g59650Os.52838.1.S1_at11/113+33901307..33906998BRCA1 C Terminus domain containing protein, expressed
LOC_Os03g59660Os.53298.1.S1_at11/113+33908054..33910453Adapter-related protein complex 1 sigma 1B subunit, putative, expressed
LOC_Os03g59670OsAffx.13553.1.S1_at11/113+33912599..33914507Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g59680Os.19299.1.S1_at10/113+33927150..33930840PAPA-1-like conserved region family protein, expressed
LOC_Os03g59690OsAffx.3645.1.S1_x_at11/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59690OsAffx.22199.2.S1_x_at1/113+33933259..33934209uncharacterized plant-specific domain TIGR01570 family protein
LOC_Os03g59700Os.27981.1.S1_at10/113+33934520..33937603Peptidyl-prolyl cis-trans isomerase H, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53298.1.S1_at--1082--2651Chr03:33909191..33909215 (25 bp)
AAGCCTTTACTTCTGCATGTGCATT
LOC_Os03g59660
Os.53298.1.S1_at--474--5991Chr03:33909237..33909261 (25 bp)
GAGACTCTTCAAATCATCCATCATT
LOC_Os03g59660
Os.53298.1.S1_at--257--2271Chr03:33909247..33909271 (25 bp)
AAATCATCCATCATTTTGTTGAGAT
LOC_Os03g59660
Os.53298.1.S1_at--1012--4031Chr03:33909279..33909416 (25 bp)
CGATATTTTGGCAATGTCTGCGAGC
LOC_Os03g59660
Os.53298.1.S1_at--1103--3191Chr03:33909407..33909427 (21 bp)
CAATGTCTGCGAGCTTGACCTGATA
LOC_Os03g59660
Os.53298.1.S1_at--556--8911Chr03:33909418..33909442 (25 bp)
TGACCTGATATTCAACTTCCACAAG
LOC_Os03g59660
Os.53298.1.S1_at--370--3271Chr03:33909430..33909555 (25 bp)
CAACTTCCACAAGGCATACTTTATA
LOC_Os03g59660
Os.53298.1.S1_at--233--711Chr03:33909560..33909584 (25 bp)
ATGAGGTTCTGATTGCCGGTGAGCT
LOC_Os03g59660
Os.53298.1.S1_at--1161--9451Chr03:33909567..33909591 (25 bp)
TCTGATTGCCGGTGAGCTTCAAGAA
LOC_Os03g59660
Os.53298.1.S1_at--763--2331Chr03:33909601..33909625 (25 bp)
AAAGCAGTACTACGCCTGATCACTA
LOC_Os03g59660
Os.53298.1.S1_at--694--8831Chr03:33909617..33910095 (25 bp)
TGATCACTACACAGGACAACTTGGT
LOC_Os03g59660
Target Sequence 
AAGCCTTTACTTCTGCATGTGCATTGATGCTGCTGATAATGAACTGGAGACTCTTCAAATCATCCATCATTTTGTTGAGA
TATTNGACCGATATTTTGGCAATGTCTGCGAGCTTGACCTGATATTCAACTTCCACAAGGCATACTTTATATTGGATGAG
GTTCTGATTGCCGGTGAGCTTCAAGAATCGAACAAGAAAGCAGTACTACGCCTGATCACTACACAGGACAACTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis