Browse Element(s) Details


Os.53320.1.S1_s_at

Description gb:AK101632.1
DB_XREF= gi:32986841
TID=Os.53320.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53320 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033054O21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033054O21, full insert sequence.
FL= gb:AK101632.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3027011/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g354305/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30240Os.56193.1.S1_at11/119+18410577..18412162Phosphofructokinase family protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_x_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.17117.1.S1_x_at1/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30260Os.10456.1.S1_at9/119+18426051..18427082expressed protein
LOC_Os09g30270Os.53320.2.S1_x_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.2.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270OsAffx.4931.1.S1_at2/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53320.1.S1_s_at--268--7091Chr09:18433444..18433468 (25 bp)
GTCAAACGTTTCCAATTGTTCCAGA
LOC_Os09g30270
Os.53320.1.S1_s_at--1021--1851Chr09:18433449..18433473 (25 bp)
ACGTTTCCAATTGTTCCAGAAGAAT
LOC_Os09g30270
Os.53320.1.S1_s_at--1018--5191Chr09:18433470..18433494 (25 bp)
GAATTAGTACAAGAGGGCCAACATA
LOC_Os09g30270
Os.53320.1.S1_s_at--601--932Chr12:21512656..21512680 (25 bp)
AGGCAACATCAACTCAATCCTCCAT
LOC_Os12g35430
Os.53320.1.S1_s_at--936--372Chr12:21512663..21512687 (25 bp)
ATCAACTCAATCCTCCATTAACCAG
LOC_Os12g35430
Os.53320.1.S1_s_at--568--9732Chr12:21512669..21512693 (25 bp)
TCAATCCTCCATTAACCAGCTAGGC
LOC_Os12g35430
Os.53320.1.S1_s_at--1114--9192Chr12:21512676..21512700 (25 bp)
TCCATTAACCAGCTAGGCCCTTTAC
LOC_Os12g35430
Os.53320.1.S1_s_at--887--1532Chr12:21512686..21512710 (25 bp)
AGCTAGGCCCTTTACCGGATTCAGT
LOC_Os12g35430
Os.53320.1.S1_s_at--822--3691Chr09:18433823..18433847 (25 bp)
CTATCTTGTTTTTTCAATGTTGCAA
LOC_Os09g30270
Os.53320.1.S1_s_at--329--6811Chr09:18433830..18433854 (25 bp)
GTTTTTTCAATGTTGCAAAATGCAA
LOC_Os09g30270
Os.53320.1.S1_s_at--1102--9692Chr12:21512923..21512947 (25 bp)
TCAACAATTGGATTTATTCCCCTTT
NONE
Target Sequence 
GTCAAACGTTTCCAATTGTTCCAGAAGAATTAGTACAAGAGGGCCAACATAGCACTTCAGTGTTGACTACTTTATTAGAA
CAGGTTAGTTGCATGCATGGTTTAACATTTTTCACTGTCACTATCTGCTACCTACTCATGTTTCATACTAATTTGCTTGT
TAGGCAACATCAACTCAATCCTCCATTAACCAGCTAGGCCCTTTACCGGATTCAGTCTTCATTGAAGCTAATAGAAATAC
ACTACCACAGCCAAGAGCGACAACATCTACACACGTGGGCAGAGCAAGGATGAAGAGAAGCAACACAAGATCAACAACGG
CCAGATCATCTAGACCACCTAGCCAGAAGAAAAAAAAATAGGAGTTATATGGGTGCTTTCTATCTTGTTTTTTCAATGTT
GCAAAATGCAAAATAAAAGGTGCACAATTCAACAATTGGATTTATTCCCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53320.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis