Browse Element(s) Details


Os.53321.1.S1_at

Description gb:AK120997.1
DB_XREF= gi:37990620
TID=Os.53321.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033131M24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023044G20, full insert sequence.
FL= gb:AK120997.1 gb:AK103529.1 gb:AK071960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4427011/11expressed protein
LOC_Os06g167401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44230Os.4148.1.S2_a_at11/116+26679172..26689052DNA-directed RNA polymerase 3, chloroplast precursor, putative, expressed
LOC_Os06g44240OsAffx.28096.1.S1_at11/116+26689717..26691642hypothetical protein
LOC_Os06g44250Os.55671.1.S1_at10/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44250OsAffx.15962.1.S1_at2/116+26692491..26695436Haemolysin-III related family protein, expressed
LOC_Os06g44260OsAffx.15920.1.S1_at11/116+26697965..26699045RmlD substrate binding domain containing protein, expressed
LOC_Os06g44270Os.53321.1.S1_at11/116+26707020..26708889expressed protein
LOC_Os06g44270OsAffx.20617.1.A1_x_at1/116+26707020..26708889expressed protein
LOC_Os06g44280Os.18683.1.S1_at11/116+26713871..26716573retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os06g44290Os.46785.2.S1_x_at3/116+26725078..26730902retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g44290OsAffx.30226.2.S1_x_at1/116+26725078..26730902retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g44290OsAffx.442.1.S1_x_at1/116+26725078..26730902retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006005biological_processL-fucose biosynthesis
GO:0009225biological_processnucleotide-sugar metabolism
GO:0042350biological_processGDP-L-fucose biosynthesis
GO:0003824molecular_functioncatalytic activity
GO:0047918molecular_functionGDP-mannose 3,5-epimerase activity
GO:0050577molecular_functionGDP-L-fucose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53321.1.S1_at--955--4291Chr06:26708293..26708317 (25 bp)
GCGCCTTTTAAGTTGGTATTACAGT
LOC_Os06g44270
Os.53321.1.S1_at--1147--5972Chr06:26708473..26708497 (25 bp)
GAGAAAGTTTCACACTTTGCAATGT
LOC_Os06g44270
Os.53321.1.S1_at--450--5491Chr06:26708582..26708606 (25 bp)
GAACAGTTTCTATGCTTTGTGCCCT
LOC_Os06g44270
Os.53321.1.S1_at--968--8691Chr06:26708599..26708623 (25 bp)
TGTGCCCTTGTTTTGTATGCTAATT
LOC_Os06g44270
Os.53321.1.S1_at--957--10251Chr06:26708676..26708700 (25 bp)
TTTGTTGATGGCTCAGTTGTTGAAA
LOC_Os06g44270
Os.53321.1.S1_at--417--3471Chr06:26708771..26708795 (25 bp)
CAGGTAGTCTATTAGTTAGTCTTAC
LOC_Os06g44270
Os.53321.1.S1_at--406--1211Chr06:26708800..26708824 (25 bp)
AGTTTTTCTTCTACAAGCTTGTGCC
LOC_Os06g44270
Os.53321.1.S1_at--807--4931Chr06:26708816..26708840 (25 bp)
GCTTGTGCCAGATTTAACACTTCCA
LOC_Os06g44270
Os.53321.1.S1_at--157--9811Chr06:26708828..26708852 (25 bp)
TTTAACACTTCCATGTATACCCACC
LOC_Os06g44270
Os.53321.1.S1_at--382--3491Chr06:26708839..26708863 (25 bp)
CATGTATACCCACCTTACTCAAAAT
LOC_Os06g44270
Os.53321.1.S1_at--308--3111Chr06:26708864..26708888 (25 bp)
AATATTTACCATCTGTGATTAGAAC
LOC_Os06g44270
Target Sequence 
GCGCCTTTTAAGTTGGTATTACAGTCAATAGTTTTCATGTTGTTNCTGGCTACTAGATCATACAATTATCAGTTATAAGC
TCTCCCACAAAGAAGAGGTCGTTATGTTGGTTGAATAATGTGGGGTCAAACTAGTATACAATTAGAATCTTAATTGATCT
AGAACAATTTCTGTCGATTAGAGAAAGTTTCACACTTTGCAATGTTTGATGTCAATTGGCCTGAAAAAGTTTTACACACA
CGGAATAAGTAAGCTATGTTTTGATTTATGAAATAATTTTATCTGTTCAGAACAGTTTCTATGCTTTGTGCCCTTGTTTT
GTATGCTAATTATGGTTGGGAGGTGAGAGGAGATATTAATGGAATAAATTAATTTCTTATGTTTTTGTTGATGGCTCAGT
TGTTGAAAATCAAAGTGTAGTTCGTTTGTAATGAAGTCATATTATTGTTTTGGGGCTGTACATTTGTGTTAAGATAGTCA
GGTAGTCTATTAGTTAGTCTTACAGTAAGTTTTTCTTCTACAAGCTTGTGCCAGATTTAACACTTCCATGTATACCCACC
TTACTCAAAATAATATTTACCATCTGTGATTAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis