Browse Element(s) Details

Os.53323.1.S1_s_at

Description

gb:AK105337.1
DB_XREF= gi:32990546
TID=Os.53323.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53323 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F01, full insert sequence.
FL= gb:AK105337.1 gb:AK071975.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50100	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50050	Os.22453.1.S1_at	11/11	6	+	30331407..30335112	ATPase, AAA family protein, expressed
LOC_Os06g50060	OsAffx.16005.1.S1_at	11/11	6	+	30335261..30335938	Ras-related protein ARA-2, putative, expressed
LOC_Os06g50060	OsAffx.16005.1.S1_x_at	11/11	6	+	30335261..30335938	Ras-related protein ARA-2, putative, expressed
LOC_Os06g50070	NA	NA	6	+	30337683..30338296	expressed protein
LOC_Os06g50080	Os.27765.1.S1_at	11/11	6	+	30339448..30340810	expressed protein
LOC_Os06g50090	NA	NA	6	+	30345016..30345330	expressed protein
LOC_Os06g50100	Os.53323.1.S1_s_at	11/11	6	+	30345862..30349036	Protein kinase domain containing protein, expressed
LOC_Os06g50110	Os.6175.1.S1_at	11/11	6	+	30351996..30356040	expressed protein
LOC_Os06g50120	Os.47383.1.S1_at	10/11	6	+	30356703..30360200	Novel plant SNARE 11, putative, expressed
LOC_Os06g50130	Os.17198.1.S1_at	11/11	6	+	30361752..30362812	expressed protein
LOC_Os06g50140	Os.50481.1.S1_at	11/11	6	+	30363072..30365664	Glycosyl hydrolase family 9 protein, expressed
LOC_Os06g50154	Os.10917.1.S1_at	11/11	6	+	30366404..30373549	Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154	Os.22946.1.S2_at	11/11	6	+	30366404..30373549	Translocon-associated protein alpha subunit precursor, putative, expressed
LOC_Os06g50154	Os.22946.1.S1_at	10/11	6	+	30366404..30373549	Translocon-associated protein alpha subunit precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53323.1.S1_s_at--28--137	1	Chr06:30346203..30346227 (25 bp)	AGAGCTTCCGGTCGATCATGGACCC	LOC_Os06g50100
Os.53323.1.S1_s_at--236--159	1	Chr06:30346065..30346089 (25 bp)	AGCTCGAGAGGGTGCTCCAGATGGA	LOC_Os06g50100
Os.53323.1.S1_s_at--893--133	1	Chr06:30346059..30346083 (25 bp)	AGAGGGTGCTCCAGATGGAGCCACC	LOC_Os06g50100
Os.53323.1.S1_s_at--25--107	1	Chr06:30346057..30346081 (25 bp)	AGGGTGCTCCAGATGGAGCCACCGA	LOC_Os06g50100
Os.53323.1.S1_s_at--1045--907	1	Chr06:30346053..30346077 (25 bp)	TGCTCCAGATGGAGCCACCGACGAC	LOC_Os06g50100
Os.53323.1.S1_s_at--438--427	1	Chr06:30345991..30346015 (25 bp)	CCGGCGAAGAGGTGACGTCAGATCA	LOC_Os06g50100
Os.53323.1.S1_s_at--606--411	1	Chr06:30345987..30346011 (25 bp)	CGAAGAGGTGACGTCAGATCAGTCA	LOC_Os06g50100
Os.53323.1.S1_s_at--168--895	1	Chr06:30345979..30346003 (25 bp)	TGACGTCAGATCAGTCACCGGAGGA	LOC_Os06g50100
Os.53323.1.S1_s_at--327--577	1	Chr06:30345978..30346002 (25 bp)	GACGTCAGATCAGTCACCGGAGGAG	LOC_Os06g50100
Os.53323.1.S1_s_at--785--189	1	Chr06:30345977..30346001 (25 bp)	ACGTCAGATCAGTCACCGGAGGAGG	LOC_Os06g50100
Os.53323.1.S1_s_at--434--711	1	Chr06:30345975..30345999 (25 bp)	GTCAGATCAGTCACCGGAGGAGGCT	LOC_Os06g50100

Target Sequence

AGAGCTTCCGGTCGATCATGGACCCGCGGCTGGGCGGCCGGTACCCGGCGGCGGCGGCGCGGCAGGTGGCGCGGCTGGCC
GACCGCTGCCTCGTCAAGAACCCCAAGGAGCGGCCGGCGATGAGGGAGGTCGTCGAGGAGCTCGAGAGGGTGCTCCAGAT
GGAGCCACCGACGACGACGGCGGCCGACAAGGACGGCGACCGCCGCCTGCCGCCGGCGAAGAGGTGACGTCAGATCAGTC
ACCGGAGGAGGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis