Browse Element(s) Details


Os.53380.1.S1_at

Description gb:AK072353.1
DB_XREF= gi:32982376
TID=Os.53380.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53380 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055G12, full insert sequence.
FL= gb:AK072353.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3898011/11respiratory burst oxidase protein F, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g38950Os.35780.1.S1_at11/115+22751806..22758825RabGAP/TBC domain-containing protein, putative, expressed
LOC_Os05g38960Os.52995.1.S1_at11/115+22770675..22772303expressed protein
LOC_Os05g38969NANA5+22775014..22775695NA
LOC_Os05g38980Os.53380.1.S1_at11/115+22776978..22781871respiratory burst oxidase protein F, putative, expressed
LOC_Os05g38990Os.55717.1.S1_at11/115+22791057..22792632CCT motif family protein, expressed
LOC_Os05g39000Os.53410.1.S1_at11/115+22795522..22798595kinase interacting protein 1, putative, expressed
LOC_Os05g39010NANA5+22800592..22803611hypothetical protein
LOC_Os05g39020NANA5+22804463..22805301retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_s_at11/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.1.S1_x_at9/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.3.S1_x_at8/115+22806062..22807295retrotransposon protein, putative, unclassified
LOC_Os05g39030Os.24831.4.S1_x_at1/115+22806062..22807295retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006800biological_processoxygen and reactive oxygen species metabolism
GO:0006952biological_processdefense response
GO:0009060biological_processaerobic respiration
GO:0009408biological_processresponse to heat
GO:0009738biological_processabscisic acid mediated signaling
GO:0010053biological_processroot epidermal cell differentiation
GO:0043069biological_processnegative regulation of programmed cell death
GO:0005887cellular_componentintegral to plasma membrane
GO:0016174molecular_functionNAD(P)H oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53380.1.S1_at--959--8491Chr05:22781136..22781250 (25 bp)
TGGCAGCAAGATCCGGACACATTTT
LOC_Os05g38980
Os.53380.1.S1_at--1085--2891Chr05:22781269..22781293 (25 bp)
AAGGTATTCTCAGATCTGGCCAATG
LOC_Os05g38980
Os.53380.1.S1_at--806--3371Chr05:22781296..22781400 (25 bp)
CACCAGAACTCTCGTATAGGCGTTT
LOC_Os05g38980
Os.53380.1.S1_at--991--271Chr05:22781393..22781415 (23 bp)
ATAGGCGTTTTCTACTGTGGGTCTC
LOC_Os05g38980
Os.53380.1.S1_at--555--7491Chr05:22781407..22781431 (25 bp)
GTGGGTCTCCAACACTTACGAAAAT
LOC_Os05g38980
Os.53380.1.S1_at--401--3011Chr05:22781429..22781453 (25 bp)
AATGCTGAGGGATCTTTCACTAGAA
LOC_Os05g38980
Os.53380.1.S1_at--942--2591Chr05:22781468..22781492 (25 bp)
AACGACTCGGTTCCATTTCCACAAG
LOC_Os05g38980
Os.53380.1.S1_at--977--9751Chr05:22781532..22781556 (25 bp)
TAATCGCAGGCGCTCTTATATAGAA
LOC_Os05g38980
Os.53380.1.S1_at--708--9431Chr05:22781572..22781596 (25 bp)
TCGGTTAGCAACTCTTTCTGTGTAA
LOC_Os05g38980
Os.53380.1.S1_at--44--3591Chr05:22781641..22781665 (25 bp)
CATTAGTTAGTGCTGCTGCCGTTTA
LOC_Os05g38980
Os.53380.1.S1_at--426--10293Chr08:19064135..19064158 (24 bp)
TTTGCCGCGCCCAATTTAGATTAGG
NONE
Target Sequence 
TGGCAGCAAGATCCGGACACATTTTGCAAGGCCGAACTGGAGAAAGGTATTCTCAGATCTGGCCAATGCCCACCAGAACT
CTCGTATAGGCGTTTTCTACTGTGGGTCTCCAACACTTACGAAAATGCTGAGGGATCTTTCACTAGAATTCAGCCAGACG
ACAACGACTCGGTTCCATTTCCACAAGGAGAACTTCTAAGACCAGACCAGGAAAAAAACACCAAAATAATCGCAGGCGCT
CTTATATAGAACAAGAAATTTTAGCATCGGTTAGCAACTCTTTCTGTGTAAAGTTCCATCAAGAACTGGAACATTGGTGT
ACAAAGGTACGTGGGCATTAGTTAGTGCTGCTGCCGTTTATAGATGGGGAAAAAGAAAGGCATGTATTTTCTGAGCAATT
TGATTGTTTCTTAGAATGTACTAGAAACAACGTGCGGCTTTGCCGCGCCCAATTTAGATTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53380.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis