Browse Element(s) Details


Os.53404.1.S1_at

Description gb:AK072468.1
DB_XREF= gi:32982491
TID=Os.53404.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53404 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119M14, full insert sequence.
FL= gb:AK072468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4280011/11Uncharacterised protein family protein, expressed
LOC_Os09g328201/11uridine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42750OsAffx.11446.1.S1_at10/111+24655231..24657138hypothetical protein
LOC_Os01g42750OsAffx.787.1.S1_at2/111+24655231..24657138hypothetical protein
LOC_Os01g42760OsAffx.9134.1.S1_s_at11/111+24661228..24663006expressed protein
LOC_Os01g42770Os.37805.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42770Os.50844.1.S1_at11/111+24668079..24670487expressed protein
LOC_Os01g42780NANA1+24670366..24672020Papain family cysteine protease containing protein, expressed
LOC_Os01g42790Os.28964.1.S1_at11/111+24678156..24680193Papain family cysteine protease containing protein, expressed
LOC_Os01g42800Os.49871.2.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.49871.1.S1_x_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42800Os.53404.1.S1_at11/111+24681000..24687285Uncharacterised protein family protein, expressed
LOC_Os01g42810Os.32223.1.S1_at11/111+24690994..24694526expressed protein
LOC_Os01g42820Os.41273.1.S1_at11/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42820Os.17617.1.S1_at6/111+24695572..24699004RNA recognition motif family protein, expressed
LOC_Os01g42830Os.5871.1.S1_s_at11/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42830Os.5871.2.S1_at9/111+24702725..24706750Adaptin ear-binding coat-associated protein 1, putative, expressed
LOC_Os01g42840OsAffx.21359.1.S1_at11/111+24706930..24707445hypothetical protein
LOC_Os01g42850Os.1041.1.S1_x_at11/111+24707484..24713535E1-like protein-activating enzyme Gsa7p/Apg7p containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53404.1.S1_at--523--9892Chr09:19570176..19570649 (25 bp)
TACTAGCTTTAGAGGATGGGAATAT
LOC_Os09g32820
Os.53404.1.S1_at--403--7611Chr01:24682426..24682450 (25 bp)
GGGAATATCCCACAGATCAGCGTCC
LOC_Os01g42800
Os.53404.1.S1_at--833--4191Chr01:24682403..24682427 (25 bp)
CCCCTGGTCCACATCTTGAATGATT
LOC_Os01g42800
Os.53404.1.S1_at--885--9831Chr01:24682374..24682398 (25 bp)
TAAAGATGTACATATGCCCCTGCCC
LOC_Os01g42800
Os.53404.1.S1_at--395--4271Chr01:24682356..24682380 (25 bp)
CCTGCCCCTTAACATTATCTGTGTG
LOC_Os01g42800
Os.53404.1.S1_at--767--4531Chr01:24682353..24682377 (25 bp)
GCCCCTTAACATTATCTGTGTGAAG
LOC_Os01g42800
Os.53404.1.S1_at--2--7471Chr01:24682336..24682360 (25 bp)
GTGTGAAGATTTTCCATCTGACAGC
LOC_Os01g42800
Os.53404.1.S1_at--1135--6531Chr01:24682329..24682353 (25 bp)
GATTTTCCATCTGACAGCTTCTTTT
LOC_Os01g42800
Os.53404.1.S1_at--661--4332Chr05:2800414..2800804 (25 bp)
CCATCTGACAGCTTCTTTTTCATTT
NONE
Os.53404.1.S1_at--851--9551Chr01:24682310..24682334 (25 bp)
TCTTTTTCATTTTGTGCAGCCCAAA
LOC_Os01g42800
Os.53404.1.S1_at--261--10551Chr01:24682305..24682329 (25 bp)
TTCATTTTGTGCAGCCCAAAGACTA
LOC_Os01g42800
Target Sequence 
TACTAGCTTTAGAGGATGGGAATATCCCACAGATCAGCGTCCCCTGGTCCACATCTTGAATGATTCAGTTAAAGATGTAC
ATATGCCCCTGCCCCTTAACATTATCTGTGTGAAGATTTTCCATCTGACAGCTTCTTTTTCATTTTGTGCAGCCCAAAGA
CTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53404.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis