Browse Element(s) Details


Os.53433.1.S1_at

Description gb:AK072592.1
DB_XREF= gi:32982615
TID=Os.53433.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53433 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023134D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023134D01, full insert sequence.
FL= gb:AK072592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2280011/11Pectate lyase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22760NANA5+12833017..12835427hypothetical protein
LOC_Os05g22770OsAffx.8429.1.S1_at1/115+12836559..12841388retrotransposon protein, putative, unclassified
LOC_Os05g22780OsAffx.4397.1.S1_at11/115+12844942..12845341hypothetical protein
LOC_Os05g22790OsAffx.26972.1.S1_at11/115+12848694..12849089hypothetical protein
LOC_Os05g22800Os.53433.1.S1_at11/115+12855388..12860663Pectate lyase precursor, putative, expressed
LOC_Os05g22810NANA5+12868084..12872505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22820NANA5+12872769..12873554retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22830OsAffx.32206.1.S1_x_at11/115+12875941..12880249DNA-directed RNA polymerase beta chain, putative
LOC_Os05g22830OsAffx.32206.1.S1_at9/115+12875941..12880249DNA-directed RNA polymerase beta chain, putative
LOC_Os05g22830Os.26588.1.S1_x_at8/115+12875941..12880249DNA-directed RNA polymerase beta chain, putative
LOC_Os05g22830Os.47999.3.S1_x_at1/115+12875941..12880249DNA-directed RNA polymerase beta chain, putative
LOC_Os05g22840NANA5+12881481..12882610expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016829molecular_functionlyase activity
GO:0030570molecular_functionpectate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53433.1.S1_at--975--671Chr05:12859965..12859989 (25 bp)
ATGACAAGGCAATTCTCCTCGGCCA
LOC_Os05g22800
Os.53433.1.S1_at--15--6691Chr05:12859900..12859924 (25 bp)
GTTGCCTTCAATCGCTTTGGACCAG
LOC_Os05g22800
Os.53433.1.S1_at--149--10251Chr05:12859318..12859342 (25 bp)
TTTGGTCTTTTCCACGTCATCAACA
LOC_Os05g22800
Os.53433.1.S1_at--622--8271Chr05:12859258..12859282 (25 bp)
GGCAGTGCTTCACCGACCATAATTA
LOC_Os05g22800
Os.53433.1.S1_at--1047--131Chr05:12859237..12859261 (25 bp)
ATTAGCCACGGCAACAGATTCTATG
LOC_Os05g22800
Os.53433.1.S1_at--742--1251Chr05:12859222..12859246 (25 bp)
AGATTCTATGCTGATATGGCCAAAG
LOC_Os05g22800
Os.53433.1.S1_at--276--7471Chr05:12855651..12855675 (25 bp)
GTGTGGCACCACTGGAACTGGGTAT
LOC_Os05g22800
Os.53433.1.S1_at--658--2551Chr05:12855636..12855660 (25 bp)
AACTGGGTATCCGACGGCGACCTGA
LOC_Os05g22800
Os.53433.1.S1_at--572--2571Chr05:12855606..12855630 (25 bp)
AACGGCGCGTTCTTCAGGGCATCAG
LOC_Os05g22800
Os.53433.1.S1_at--252--991Chr05:12855485..12855509 (25 bp)
AGGAGGGCTCGCACTGCTGAGATCA
LOC_Os05g22800
Os.53433.1.S1_at--200--4771Chr05:12855454..12855478 (25 bp)
GCTGCATTCGATGATTTTTCTTTCT
LOC_Os05g22800
Target Sequence 
ATGACAAGGCAATTCTCCTCGGCCACAACGACGACTACACCGACGACAAGGCCATGCAGGTCACCGTTGCCTTCAATCGC
TTTGGACCAGGCCTCGTCCAAAGAATGCCAAGGTGTCGGTTTGGTCTTTTCCACGTCATCAACAACGATTACATAGCATG
GCAAAAGTACGCCATTGGGGGCAGTGCTTCACCGACCATAATTAGCCACGGCAACAGATTCTATGCTGATATGGCCAAAG
AGGTGACGAAGCGCGATGACGATGTGCCGGAGAGCGTGTGGCACCACTGGAACTGGGTATCCGACGGCGACCTGATGCTC
AACGGCGCGTTCTTCAGGGCATCAGGCGAAGCAAGGACAGATAATTTGAAAGCCCCTAGCTTTGCAAGGTCTGCCCCCTC
CGTGCCGTCGATGACTTCCTCGGCAGGCGCCCTCTCCTGCAAGGAGGGCTCGCACTGCTGAGATCAGCTACTGCTGCATT
CGATGATTTTTCTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53433.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis