Browse Element(s) Details


OsAffx.26972.1.S1_at

Description tigr:9633.m02008
TID=OsAffx.26972.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2279011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g22750OsAffx.18275.1.S1_x_at2/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22750OsAffx.26607.2.S1_at1/115+12824448..12829434retrotransposon protein, putative, unclassified
LOC_Os05g22760NANA5+12833017..12835427hypothetical protein
LOC_Os05g22770OsAffx.8429.1.S1_at1/115+12836559..12841388retrotransposon protein, putative, unclassified
LOC_Os05g22780OsAffx.4397.1.S1_at11/115+12844942..12845341hypothetical protein
LOC_Os05g22790OsAffx.26972.1.S1_at11/115+12848694..12849089hypothetical protein
LOC_Os05g22800Os.53433.1.S1_at11/115+12855388..12860663Pectate lyase precursor, putative, expressed
LOC_Os05g22810NANA5+12868084..12872505retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g22820NANA5+12872769..12873554retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26972.1.S1_at--1113--4151Chr05:12848998..12849022 (25 bp)
CGCCGTCACGCCGATGTAGAATTCA
LOC_Os05g22790
OsAffx.26972.1.S1_at--1029--4491Chr05:12848997..12849021 (25 bp)
GCCGTCACGCCGATGTAGAATTCAG
LOC_Os05g22790
OsAffx.26972.1.S1_at--147--4031Chr05:12848995..12849019 (25 bp)
CGTCACGCCGATGTAGAATTCAGGA
LOC_Os05g22790
OsAffx.26972.1.S1_at--1109--9671Chr05:12848993..12849017 (25 bp)
TCACGCCGATGTAGAATTCAGGAGA
LOC_Os05g22790
OsAffx.26972.1.S1_at--233--1831Chr05:12848991..12849015 (25 bp)
ACGCCGATGTAGAATTCAGGAGAAG
LOC_Os05g22790
OsAffx.26972.1.S1_at--838--1331Chr05:12848920..12848944 (25 bp)
AGAGGGTGCCGCCATCGCGTGCGAC
LOC_Os05g22790
OsAffx.26972.1.S1_at--655--4331Chr05:12848909..12848933 (25 bp)
CCATCGCGTGCGACGGTGCGAGTAC
LOC_Os05g22790
OsAffx.26972.1.S1_at--572--7271Chr05:12848902..12848926 (25 bp)
GTGCGACGGTGCGAGTACGCGAATT
LOC_Os05g22790
OsAffx.26972.1.S1_at--371--8091Chr05:12848837..12848861 (25 bp)
GGAGCGGCGCCGTTCGAGAAGAAGC
LOC_Os05g22790
OsAffx.26972.1.S1_at--1144--4491Chr05:12848829..12848853 (25 bp)
GCCGTTCGAGAAGAAGCCGAGCCTC
LOC_Os05g22790
OsAffx.26972.1.S1_at--518--4031Chr05:12848827..12848851 (25 bp)
CGTTCGAGAAGAAGCCGAGCCTCGC
LOC_Os05g22790
Target Sequence 
CGCCGTCACGCCGATGTAGAATTCAGGAGAAGGGGAAAGGCGTCGCCGTGGCGCCGGCGTGGAGACCGGGATGGGAGGAG
AGGGTGCCGCCATCGCGTGCGACGGTGCGAGTACGCGAATTGGGGATCGAAGCCTCGACGGCGCCGGTGGGGAAGGGCGG
TGGAGCGGCGCCGTTCGAGAAGAAGCCGAGCCTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis