Browse Element(s) Details


Os.53453.1.S1_at

Description gb:AK072712.1
DB_XREF= gi:32982735
TID=Os.53453.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141I08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141I08, full insert sequence.
FL= gb:AK072712.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4394010/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43880OsAffx.32182.1.S1_at11/1112+27210143..27212401expressed protein
LOC_Os12g43890Os.24486.1.A1_at11/1112+27216117..27217280GNS1/SUR4 membrane family protein, putative, expressed
LOC_Os12g43900NANA12+27219001..27223042retrotransposon protein, putative, LINE subclass
LOC_Os12g43910NANA12+27223677..27224906retrotransposon protein, putative, LINE subclass
LOC_Os12g43930Os.33683.1.S1_at10/1112+27230138..27232311Zinc finger, C3HC4 type family protein, expressed
LOC_Os12g43940Os.53453.1.S1_at10/1112+27232877..27237839TPR Domain containing protein, expressed
LOC_Os12g43950Os.6492.1.S1_at11/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43950Os.4650.1.S1_at1/1112+27237930..27243182Associated with HOX family protein, expressed
LOC_Os12g43960OsAffx.7884.1.S1_at11/1112+27251828..27252368hypothetical protein
LOC_Os12g43970Os.54768.1.S1_at10/1112+27252953..27255061hydrolase, alpha/beta fold family protein, expressed
LOC_Os12g43980Os.43567.1.S1_x_at8/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43980Os.38172.1.S1_x_at4/1112+27255789..27258283transposon protein, putative, unclassified, expressed
LOC_Os12g43990Os.57165.1.S1_at11/1112+27260197..27261033expressed protein
LOC_Os12g44000Os.12316.1.S1_at10/1112+27261833..27265116Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53453.1.S1_at--765--9631Chr12:27237078..27237101 (24 bp)
TCAGGCACTGAAGGTTGATCCGTTT
LOC_Os12g43940
Os.53453.1.S1_at--947--6371Chr12:27237093..27237117 (25 bp)
GATCCGTTTGATGGCACGTTGTTCT
LOC_Os12g43940
Os.53453.1.S1_at--338--631NONE
ATGCATGCGAAAAGCTACGGCCCAA
NONE
Os.53453.1.S1_at--1055--7471Chr12:27237203..27237227 (25 bp)
GTGGGCAAAGTCCTACTATCGGCAA
LOC_Os12g43940
Os.53453.1.S1_at--179--3551Chr12:27237360..27237384 (25 bp)
CATAGGGCACTTGGTCGAGCTTTAG
LOC_Os12g43940
Os.53453.1.S1_at--661--4071Chr12:27237375..27237399 (25 bp)
CGAGCTTTAGAGTTGGACCCTGAAA
LOC_Os12g43940
Os.53453.1.S1_at--1131--5453Chr12:27237511..27237535 (25 bp)
GAACTGTGCGGTTGATCCCTGAAAT
LOC_Os12g43940
Os.53453.1.S1_at--1138--8511Chr12:27237569..27237593 (25 bp)
TGGAAGCTCCTTTTGTGTTATGAAA
LOC_Os12g43940
Os.53453.1.S1_at--684--5451Chr12:27237598..27237622 (25 bp)
GAACGACGCAAACGCTCAGTGATTT
LOC_Os12g43940
Os.53453.1.S1_at--10--8731Chr12:27237669..27237693 (25 bp)
TGTCTGGTCTTTTATGTCGTGTTTC
LOC_Os12g43940
Os.53453.1.S1_at--604--3551Chr12:27237701..27237725 (25 bp)
CATCTTCCTGGAGTGGCTGTTAGAC
LOC_Os12g43940
Target Sequence 
TCAGGCACTGAAGGTTGATCCGTTTGATGGCACGTTGTTCTCAAACAGGAGTCTTTGCTGGCTCCGCATGGGTGATGGAG
AAAGGGCTTTGGATGATGCCCATGCATGCGAAAAGCTACGGCCCAAAGTGGGCAAAGTCCTACTATCGGCAAGGAGCAGC
TCTAATGTTTCTGAAGGAGTATGAGAGGGCTCATAGGGCACTTGGTCGAGCTTTAGAGTTGGACCCTGAAAGTGAAGAGA
TCGAGAATTTGTATTGGGAGTCGATGGAACTGTGCGGTTGATCCCTGAAATGCCAGCTACAGATAGAAGAAGCACACGCA
GAACTGGAAGCTCCTTTTGTGTTATGAAAGATGGAACGACGCAAACGCTCAGTGATTTGCTGCTTTTTGTGTACATATAC
TTAGGCTGTCAAAACAGAAACAAATGTCTGGTCTTTTATGTCGTGTTTCGTCGTGACATCTTCCTGGAGTGGCTGTTAGA
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53453.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis