Browse Element(s) Details


Os.53486.1.S1_at

Description gb:AK072906.1
DB_XREF= gi:32982929
TID=Os.53486.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53486 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023147K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023147K18, full insert sequence.
FL= gb:AK072906.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4356010/11WRKY family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43519Os.37365.1.S1_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S2_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S3_at11/112+26256778..26259797expressed protein
LOC_Os02g43530OsAffx.24702.1.S1_at11/112+26261565..26261858hypothetical protein
LOC_Os02g43540Os.1327.1.S1_at11/112+26265812..26266785expressed protein
LOC_Os02g43540OsAffx.24703.1.S1_s_at11/112+26265812..26266785expressed protein
LOC_Os02g43550Os.55804.1.S1_at11/112+26269531..26271815cyclin family protein, putative, expressed
LOC_Os02g43560OsAffx.24704.1.S1_s_at11/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43560Os.53486.1.S1_at10/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43570OsAffx.24705.1.S1_at11/112+26284282..26284741hypothetical protein
LOC_Os02g43580OsAffx.24706.1.S1_at11/112+26287318..26287560hypothetical protein
LOC_Os02g43590Os.5489.1.S1_at11/112+26291016..26295465phagocytosis and cell motility protein ELMO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53486.1.S1_at--401--351NONE
ATAACTCTCTGGTTTTGCGGAGCTT
NONE
Os.53486.1.S1_at--490--4691Chr02:26274941..26274965 (25 bp)
GCGGAGCTTCTGATCTGTTGGAGAT
LOC_Os02g43560
Os.53486.1.S1_at--875--1491Chr02:26274648..26274672 (25 bp)
AGCACTTTGCATTTTCGTCGTTGAT
LOC_Os02g43560
Os.53486.1.S1_at--187--9971Chr02:26274606..26274630 (25 bp)
TACCGTCGTATACCTATATGTCCAC
LOC_Os02g43560
Os.53486.1.S1_at--399--271Chr02:26274591..26274615 (25 bp)
ATATGTCCACCGTTTGATCGATTAA
LOC_Os02g43560
Os.53486.1.S1_at--885--6391Chr02:26274576..26274600 (25 bp)
GATCGATTAACTGTGGCTAGCTCTA
LOC_Os02g43560
Os.53486.1.S1_at--106--10011Chr02:26274559..26274583 (25 bp)
TAGCTCTAGCTCTCTTTCATTTTGA
LOC_Os02g43560
Os.53486.1.S1_at--164--5771Chr02:26274516..26274540 (25 bp)
GACGTAATATCGAGCCATGCCTGCG
LOC_Os02g43560
Os.53486.1.S1_at--799--591Chr02:26274500..26274524 (25 bp)
ATGCCTGCGCAATGTACCAGTACTG
LOC_Os02g43560
Os.53486.1.S1_at--334--3451Chr02:26274483..26274507 (25 bp)
CAGTACTGCTAGCTATACGTGAGAT
LOC_Os02g43560
Os.53486.1.S1_at--807--4651Chr02:26274453..26274477 (25 bp)
GCGTGCATGCACGTACAATTTACAA
LOC_Os02g43560
Target Sequence 
ATAACTCTCTGGTTTTGCGGAGCTTCTGATCTGTTGGAGATCAGAACTACAAACAGGCATTTTTGTGTGATTTGGATGTA
CACATGCCAAAACTGATCGACGATATATATATGAATGCGCATATGCATGCATGCAGGAGCTACTTCAGGTGCACGCACAG
CAACTGCCGCGTGAAGAAGCGGGTGGAGCGGCTGTCGACGGACTGCCGCATGGTGATCACCACCTACGAGGGCCGCCACA
CGCACTCCCCCTGCGACGACAACTCCTCCGGCGAGCACACCAACTGCTTCAGCTCCTTCTGAAGATTTTAGCACTTTGCA
TTTTCGTCGTTGATCCATCCATCAATATATATACCGTCGTATACCTATATGTCCACCGTTTGATCGATTAACTGTGGCTA
GCTCTAGCTCTCTTTCATTTTGATGGTTGAGATATATAGGCGACGTAATATCGAGCCATGCCTGCGCAATGTACCAGTAC
TGCTAGCTATACGTGAGATGTATTGCGTGCATGCACGTACAATTTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53486.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis