Browse Element(s) Details


OsAffx.24704.1.S1_s_at

Description tigr:9630.m04193
TID=OsAffx.24704.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=WRKY-like DNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4356011/11WRKY family transcription factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43519Os.37365.1.S1_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S2_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S3_at11/112+26256778..26259797expressed protein
LOC_Os02g43530OsAffx.24702.1.S1_at11/112+26261565..26261858hypothetical protein
LOC_Os02g43540Os.1327.1.S1_at11/112+26265812..26266785expressed protein
LOC_Os02g43540OsAffx.24703.1.S1_s_at11/112+26265812..26266785expressed protein
LOC_Os02g43550Os.55804.1.S1_at11/112+26269531..26271815cyclin family protein, putative, expressed
LOC_Os02g43560OsAffx.24704.1.S1_s_at11/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43560Os.53486.1.S1_at10/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43570OsAffx.24705.1.S1_at11/112+26284282..26284741hypothetical protein
LOC_Os02g43580OsAffx.24706.1.S1_at11/112+26287318..26287560hypothetical protein
LOC_Os02g43590Os.5489.1.S1_at11/112+26291016..26295465phagocytosis and cell motility protein ELMO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24704.1.S1_s_at--27--5411Chr02:26277894..26277918 (25 bp)
GAAGCTACTCCAGATGCCATTCGAC
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--1108--4371Chr02:26277870..26277894 (25 bp)
CCAAGAAGATCAGCCCGGAATCCAT
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--321--8211Chr02:26277854..26277878 (25 bp)
GGAATCCATGGCGTGATGCTCTCTT
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--148--9531Chr02:26277835..26277859 (25 bp)
TCTCTTCTGACCACTGCGGGCTGTA
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--249--3831Chr02:26277806..26277830 (25 bp)
CTGCCGGCGCTTCCGTTAAGCAACT
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--59--7911Chr02:26277728..26277752 (25 bp)
GGTTCCATGCCCAATATTGGCGGCG
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--526--8451Chr02:26277600..26277624 (25 bp)
TGGCCACCACTGTAACCAAAGCTGG
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--813--3271Chr02:26277584..26277608 (25 bp)
CAAAGCTGGCAATGAGAGTACTACT
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--115--6091Chr02:26277569..26277593 (25 bp)
GAGTACTACTTGCAATGGCTCCACT
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--650--3591Chr02:26277562..26277585 (24 bp)
CTTGCAATGGCTCCACTACATGGTG
LOC_Os02g43560
OsAffx.24704.1.S1_s_at--14--7911Chr02:26277318..26277342 (25 bp)
GGTTGTCAAGAACAGTCTCCATCCC
LOC_Os02g43560
Target Sequence 
GAAGCTACTCCAGATGCCATTCGACCAAGAAGATCAGCCCGGAATCCATGGCGTGATGCTCTCTTCTGACCACTGCGGGC
TGTACCCTCTGCCGGCGCTTCCGTTAAGCAACTCCGCCGCCGCCGCCGCCGCAACCGTCGCATTGGGGAAGCACAGTGCA
GCCGCCGGTTCCATGCCCAATATTGGCGGCGCTGAGGAGGTGGCCACCACTGTAACCAAAGCTGGCAATGAGAGTACTAC
TTGCAATGGCTCCACTACATGGTGGAGGGGCTCGACGATGGCGGCGGCGGGGGAGAAGGGGAAGATGAAGATCAGGAGGA
AGATGAGGGAGCCGAGGTTCTGCTTCCAGACCAGAAGCGAAGTGGATGTGCTGGATGACGGGTACAAGTGGAGGAAGTAC
GGACAGAAGGTTGTCAAGAACAGTCTCCATCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24704.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis