Browse Element(s) Details


Os.5489.1.S1_at

Description gb:AK069478.1
DB_XREF= gi:32979502
TID=Os.5489.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5489 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023020M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023020M12, full insert sequence.
FL= gb:AK069478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4359011/11phagocytosis and cell motility protein ELMO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43540Os.1327.1.S1_at11/112+26265812..26266785expressed protein
LOC_Os02g43540OsAffx.24703.1.S1_s_at11/112+26265812..26266785expressed protein
LOC_Os02g43550Os.55804.1.S1_at11/112+26269531..26271815cyclin family protein, putative, expressed
LOC_Os02g43560OsAffx.24704.1.S1_s_at11/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43560Os.53486.1.S1_at10/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43570OsAffx.24705.1.S1_at11/112+26284282..26284741hypothetical protein
LOC_Os02g43580OsAffx.24706.1.S1_at11/112+26287318..26287560hypothetical protein
LOC_Os02g43590Os.5489.1.S1_at11/112+26291016..26295465phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os02g43600Os.34081.1.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed
LOC_Os02g43600Os.7743.2.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed
LOC_Os02g43610NANA2+26316051..26316757hypothetical protein
LOC_Os02g43620Os.51696.1.S1_at11/112+26317491..26320266Major Facilitator Superfamily protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5489.1.S1_at--146--8291Chr02:26291821..26291845 (25 bp)
GGCTTGACATGCATGCCACTTACAT
LOC_Os02g43590
Os.5489.1.S1_at--326--8131Chr02:26291570..26291594 (25 bp)
GGACATGCCATCATACAAGCTTTTG
LOC_Os02g43590
Os.5489.1.S1_at--175--10231Chr02:26291549..26291573 (25 bp)
TTTGGCCCGCTAGCTAGTAACTGAA
LOC_Os02g43590
Os.5489.1.S1_at--672--8491Chr02:26291516..26291540 (25 bp)
TGGCTACGTGCTGCAAGGCTTGAGT
LOC_Os02g43590
Os.5489.1.S1_at--216--2891Chr02:26291486..26291510 (25 bp)
AAGGGTTGCAACTAGTGCCCACAAA
LOC_Os02g43590
Os.5489.1.S1_at--940--631Chr02:26291439..26291463 (25 bp)
ATGCACTTGTTTCCTCTCAAGTTTA
LOC_Os02g43590
Os.5489.1.S1_at--1089--9871Chr02:26291412..26291436 (25 bp)
TACTCTGTTAACCTGTCTCCAAATT
LOC_Os02g43590
Os.5489.1.S1_at--420--1511Chr02:26291363..26291387 (25 bp)
AGCACGCCACGTAGGGTAACTGAAG
LOC_Os02g43590
Os.5489.1.S1_at--315--8991Chr02:26291343..26291367 (25 bp)
TGAAGTGTCCGATCAGCTGCCAGGG
LOC_Os02g43590
Os.5489.1.S1_at--1090--10771Chr02:26291280..26291304 (25 bp)
TTGATGCCCGTCATACCACGAAATG
LOC_Os02g43590
Os.5489.1.S1_at--46--1111Chr02:26291194..26291218 (25 bp)
AGTGTCTTCTGTAGTGTACCATATT
LOC_Os02g43590
Target Sequence 
GGCTTGACATGCATGCCACTTACATGGACTTCAATACGGTNATGAAGTCCACNCGACNTCAGCTANAAAGGGAGCTCTTG
CTTGAAGATATTCAGCGGATTGAGGACATGCCATCATACAAGCTTTTGGCCCGCTAGCTAGTAACTGAACCATAACATGG
CTACGTGCTGCAAGGCTTGAGTTGCATAAGGGTTGCAACTAGTGCCCACAAACAGTGTGAATTCCAAAACGCAGATGCAC
TTGTTTCCTCTCAAGTTTAGGTACTCTGTTAACCTGTCTCCAAATTACAAGATAGAGGTNTCTTGGNCATAGCACGCCAC
GTAGGGTAACTGAAGTGTCCGATCAGCTGCCAGGGCAGAGTGTTTGTAGGTTGGGTGTTTTGTTGCAGTTTGGTTGATGC
CCGTCATACCACGAAATGAAGTGCTTCTAGGTTTTCCTTTTTCCTTTATAAACAAGAGGCTCTTGTGAANGCTAATCTGA
GTGTCTTCTGTAGTGTACCATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5489.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis