Browse Element(s) Details


Os.51696.1.S1_at

Description gb:AK063448.1
DB_XREF= gi:32973466
TID=Os.51696.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51696 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F09, full insert sequence.
FL= gb:AK063448.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4362011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43590Os.5489.1.S1_at11/112+26291016..26295465phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os02g43600Os.34081.1.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed
LOC_Os02g43600Os.7743.2.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed
LOC_Os02g43610NANA2+26316051..26316757hypothetical protein
LOC_Os02g43620Os.51696.1.S1_at11/112+26317491..26320266Major Facilitator Superfamily protein, expressed
LOC_Os02g43630OsAffx.24707.1.S1_at11/112+26323191..26323574hypothetical protein
LOC_Os02g43640NANA2+26329609..26331706expressed protein
LOC_Os02g43660Os.36684.1.S1_at11/112+26337715..26339599Plastocyanin-like domain containing protein, expressed
LOC_Os02g43670Os.54844.1.S1_at1/112+26342803..26347610Transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0008643biological_processcarbohydrate transport
GO:0015794biological_processglycerol-3-phosphate transport
GO:0005215molecular_functiontransporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015169molecular_functionglycerol-3-phosphate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51696.1.S1_at--491--9871Chr02:26319822..26319846 (25 bp)
TACAGTTTTGCAATGCTGCCGTGAT
LOC_Os02g43620
Os.51696.1.S1_at--896--711Chr02:26319896..26319920 (25 bp)
ATGATCTCAGTTTCTACAGCTTGGT
LOC_Os02g43620
Os.51696.1.S1_at--314--2151Chr02:26319911..26319935 (25 bp)
ACAGCTTGGTGCTTACGATCACAGC
LOC_Os02g43620
Os.51696.1.S1_at--642--5171Chr02:26319934..26319958 (25 bp)
GCAAGCAACATGATCGCGGTGGCAT
LOC_Os02g43620
Os.51696.1.S1_at--150--7131Chr02:26319991..26320015 (25 bp)
GTCATCGGTTCATTATCCATGGTGA
LOC_Os02g43620
Os.51696.1.S1_at--84--731Chr02:26320050..26320074 (25 bp)
ATGTTCTTTTTTCCTCGTATCACGG
LOC_Os02g43620
Os.51696.1.S1_at--948--4131Chr02:26320119..26320143 (25 bp)
CCCAAGTACTGGTCCTGAAGGCTGT
LOC_Os02g43620
Os.51696.1.S1_at--1048--8771Chr02:26320152..26320176 (25 bp)
TGTTTACTGCTATTCGTATCGCGGT
LOC_Os02g43620
Os.51696.1.S1_at--1070--6891Chr02:26320167..26320191 (25 bp)
GTATCGCGGTCATCAACATCGGTGA
LOC_Os02g43620
Os.51696.1.S1_at--934--6011Chr02:26320193..26320217 (25 bp)
GAGAGATCCTGATGTAGCGCCTCTG
LOC_Os02g43620
Os.51696.1.S1_at--607--6971Chr02:26320206..26320230 (25 bp)
GTAGCGCCTCTGCTTATGTATTAAG
LOC_Os02g43620
Target Sequence 
TACAGTTTTGCAATGCTGCCGTGATTGGGATATGCAACAGTTGATTCTAGAGAAAGGCAAACTAGATCGAGCTTATGATC
TCAGTTTCTACAGCTTGGTGCTTACGATCACAGCAAGCAACATGATCGCGGTGGCATTTGTAGGTTTTGTTTCGTCAGAG
GAAAATATAGTCATCGGTTCATTATCCATGGTGACATTCTTTTAGTATGCAAATGTGTTGTAGTAACCATGTTCTTTTTT
CCTCGTATCACGGTTTAGGTGCTAGATGAACATAGATATACACCAATATCTGCCTCTCCCAAGTACTGGTCCTGAAGGCT
GTGTACATAATGTTTACTGCTATTCGTATCGCGGTCATCAACATCGGTGAAGAGAGATCCTGATGTAGCGCCTCTGCTTA
TGTATTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51696.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis