Browse Element(s) Details


Os.36684.1.S1_at

Description gb:AK062889.1
DB_XREF= gi:32972907
TID=Os.36684.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36684 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-108-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-E02, full insert sequence.
FL= gb:AK062889.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4366011/11Plastocyanin-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43600Os.34081.1.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed
LOC_Os02g43600Os.7743.2.S1_at1/112+26311628..26314557ribosomal protein L19 containing protein, expressed
LOC_Os02g43610NANA2+26316051..26316757hypothetical protein
LOC_Os02g43620Os.51696.1.S1_at11/112+26317491..26320266Major Facilitator Superfamily protein, expressed
LOC_Os02g43630OsAffx.24707.1.S1_at11/112+26323191..26323574hypothetical protein
LOC_Os02g43640NANA2+26329609..26331706expressed protein
LOC_Os02g43660Os.36684.1.S1_at11/112+26337715..26339599Plastocyanin-like domain containing protein, expressed
LOC_Os02g43670Os.54844.1.S1_at1/112+26342803..26347610Transferase family protein, expressed
LOC_Os02g43680OsAffx.12480.1.S1_at11/112+26358015..26358512hypothetical protein
LOC_Os02g43690OsAffx.24709.1.S1_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690OsAffx.24709.1.S1_x_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690Os.7869.1.S1_x_at5/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0031225cellular_componentanchored to membrane
GO:0005489molecular_functionelectron transporter activity
GO:0005507molecular_functioncopper ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36684.1.S1_at--918--7371Chr02:26338274..26338298 (25 bp)
GTGAGCTCGGCTGACTACAGCGCGT
LOC_Os02g43660
Os.36684.1.S1_at--1142--6351Chr02:26338233..26338257 (25 bp)
GATCCAGTCCTACAGCGACCAGAAC
LOC_Os02g43660
Os.36684.1.S1_at--677--5851Chr02:26338217..26338241 (25 bp)
GACCAGAACACCAAGATCGCGCTCA
LOC_Os02g43660
Os.36684.1.S1_at--172--9611Chr02:26337850..26337874 (25 bp)
TCATCTTCATCCAGTTCGGCTATTA
LOC_Os02g43660
Os.36684.1.S1_at--528--4871Chr02:26337832..26337856 (25 bp)
GCTATTATTTCTCCGCGACGTTTAA
LOC_Os02g43660
Os.36684.1.S1_at--839--10291Chr02:26337805..26337829 (25 bp)
TTTCCTTATTAGTTTACGCGCTCCG
LOC_Os02g43660
Os.36684.1.S1_at--906--4792Chr04:17330739..17330761 (23 bp)
GCTCCGTGAACTCGTCTTTGTATTG
NONE
Os.36684.1.S1_at--774--7132Chr04:17330726..17330750 (25 bp)
GTCTTTGTATTGTACTACTACGACC
NONE
Os.36684.1.S1_at--482--5811Chr02:26337752..26337776 (25 bp)
GACCGCGATTTCGTATTGGAACTTT
LOC_Os02g43660
Os.36684.1.S1_at--684--8172Chr04:17330688..17330712 (25 bp)
GGAACTTTGATTACTCCCTTTGCAA
NONE
Os.36684.1.S1_at--510--10412Chr04:17330678..17330702 (25 bp)
TTACTCCCTTTGCAAAAATACTCCG
NONE
Target Sequence 
GTGAGCTCGGCTGACTACAGCGCGTGCTCCGCCAGCAACTCGATCCAGTCCTACAGCGACCAGAACACCAAGATCGCGCT
CACCAAGCCCGGCACCCGCTACTTCATCTGCGGCACCAGCGGCCACTGCTCCGGCGGCATGAAGCTCGCCGTCACGGTCT
CCGCGGCGGCCGNCACCACCCCCACCCCGACGGCGTCGTCGTCCCCGCCGTCCACCGNGACGCCCGCCACGCCGTCATCG
GACCCCGGCATGGACACGCCCTCGTCGACGCCGGACGCGACCACGACGCCGACGACGACGACGACGAAGTCGACGGGCAG
CACCGGCGGGGCCAGCGGCANCGAGGCCCGTTCGGTGATGGGCCTGCTGGTCGGGNCCGTCGGCCTCGCCATGATGGGCT
AGGCTAGGCAAGAGGCAGTGCTGCTCATCTTCATCCAGTTCGGCTATTATTTCTCCGCGACGTTTAATTTTTCCTTATTA
GTTTACGCGCTCCGTGAACTCGTCTTTGTATTGTACTACTACGACCGCGATTTCGTATTGGAACTTTGATTACTCCCTTT
GCAAAAATACTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36684.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis