Browse Element(s) Details


OsAffx.12480.1.S1_at

Description tigr:9630.m04207
TID=OsAffx.12480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4368011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43660Os.36684.1.S1_at11/112+26337715..26339599Plastocyanin-like domain containing protein, expressed
LOC_Os02g43670Os.54844.1.S1_at1/112+26342803..26347610Transferase family protein, expressed
LOC_Os02g43680OsAffx.12480.1.S1_at11/112+26358015..26358512hypothetical protein
LOC_Os02g43690OsAffx.24709.1.S1_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690OsAffx.24709.1.S1_x_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690Os.7869.1.S1_x_at5/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43700Os.1344.1.S1_at11/112+26373777..26375739Lipase family protein, expressed
LOC_Os02g43710OsAffx.24710.1.S1_at10/112+26376480..26379707enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43720Os.49236.1.S1_at10/112+26380632..26383677enoyl-CoA hydratase/isomerase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12480.1.S1_at--1101--7551Chr02:26358421..26358445 (25 bp)
GGGCCCTAACCGGTGATGGATGCAT
LOC_Os02g43680
OsAffx.12480.1.S1_at--710--431Chr02:26358398..26358422 (25 bp)
ATCTTCGAGCGATGTAGGTGCCACC
LOC_Os02g43680
OsAffx.12480.1.S1_at--696--7791Chr02:26358361..26358385 (25 bp)
GGTCCTCTTCGACGATGATTACACC
LOC_Os02g43680
OsAffx.12480.1.S1_at--847--4771Chr02:26358323..26358347 (25 bp)
GCTGCCGTCAGCAAGCTCGGGATCC
LOC_Os02g43680
OsAffx.12480.1.S1_at--655--9431Chr02:26358307..26358331 (25 bp)
TCGGGATCCTCTCTGACAATGGCGC
LOC_Os02g43680
OsAffx.12480.1.S1_at--170--4791Chr02:26358238..26358262 (25 bp)
GCTGCCAACGGCGAGTTAGGGTTCC
LOC_Os02g43680
OsAffx.12480.1.S1_at--1096--4051Chr02:26358205..26358229 (25 bp)
CGAGGCTTTCTTCGGCGATGGCTTA
LOC_Os02g43680
OsAffx.12480.1.S1_at--447--4111Chr02:26358155..26358179 (25 bp)
CGCTTCGTGTCGTTACTAGGTGAGA
LOC_Os02g43680
OsAffx.12480.1.S1_at--302--8291Chr02:26358090..26358114 (25 bp)
GGCATACGACGCCTCTAAAGCGTTT
LOC_Os02g43680
OsAffx.12480.1.S1_at--458--2651Chr02:26358073..26358097 (25 bp)
AAGCGTTTTCCCAAGAATGGAGAAT
LOC_Os02g43680
OsAffx.12480.1.S1_at--65--9791Chr02:26358045..26358069 (25 bp)
TAAGTTTGATCGAGACTCCGACTCC
LOC_Os02g43680
Target Sequence 
GGGCCCTAACCGGTGATGGATGCATCTTCGAGCGATGTAGGTGCCACCGCCACGGAGCTTGGTCCTCTTCGACGATGATT
ACACCTCCTCCTCGCGGTGCTGCCGTCAGCAAGCTCGGGATCCTCTCTGACAATGGCGCCTTCTGCTCTGCCCCCACGCA
CCTCTCCTCCCAGAGCCACCGCTGCTGCCAACGGCGAGTTAGGGTTCCGGCGAGGTCGAGGCTTTCTTCGGCGATGGCTT
ATTCCTCTGGCCCCGAGGACTTGGCTCGCTTCGTGTCGTTACTAGGTGAGAGAGAAAGGGGAAACGGTGAAGAGAAGAAG
ACGGGGAAGAGGGCATACGACGCCTCTAAAGCGTTTTCCCAAGAATGGAGAATAGATAAGTTTGATCGAGACTCCGACTC
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12480.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis