Browse Element(s) Details


Os.49236.1.S1_at

Description gb:AK101814.1
DB_XREF= gi:32987023
TID=Os.49236.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49236 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033067A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033067A05, full insert sequence.
FL= gb:AK101814.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4372010/11enoyl-CoA hydratase/isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43680OsAffx.12480.1.S1_at11/112+26358015..26358512hypothetical protein
LOC_Os02g43690OsAffx.24709.1.S1_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690OsAffx.24709.1.S1_x_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690Os.7869.1.S1_x_at5/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43700Os.1344.1.S1_at11/112+26373777..26375739Lipase family protein, expressed
LOC_Os02g43710OsAffx.24710.1.S1_at10/112+26376480..26379707enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43720Os.49236.1.S1_at10/112+26380632..26383677enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43730OsAffx.24711.1.S1_at11/112+26384935..26385175hypothetical protein
LOC_Os02g43740Os.54104.1.S1_at11/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740Os.46554.2.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740OsAffx.2666.1.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43750Os.52763.1.S1_at11/112+26390632..26397394Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_s_at11/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760Os.1349.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43770OsAffx.24712.1.S1_at11/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43770OsAffx.24712.2.S1_x_at2/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43780OsAffx.12481.1.S1_at11/112+26407575..26409920hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0008152biological_processmetabolism
GO:0009062biological_processfatty acid catabolism
GO:0009845biological_processseed germination
GO:0042371biological_processvitamin K biosynthesis
GO:0005777cellular_componentperoxisome
GO:0003824molecular_functioncatalytic activity
GO:0004300molecular_functionenoyl-CoA hydratase activity
GO:0008935molecular_functionnaphthoate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49236.1.S1_at--641--9751Chr02:26382884..26382908 (25 bp)
TAATATTCACTGGTCGTAGATTCGA
LOC_Os02g43720
Os.49236.1.S1_at--920--9391Chr02:26382897..26382921 (25 bp)
TCGTAGATTCGATGCAGTAGAAGCT
LOC_Os02g43720
Os.49236.1.S1_at--570--3451Chr02:26382911..26382932 (22 bp)
CAGTAGAAGCTGTAACCATGGGAGT
LOC_Os02g43720
Os.49236.1.S1_at--543--891Chr02:26383093..26383117 (25 bp)
AGGCTTATAAAAGGGCTCTTGAACT
LOC_Os02g43720
Os.49236.1.S1_at--252--331NONE
ATAAATCAGAAAGGTCCGTTAGCGA
NONE
Os.49236.1.S1_at--374--2291Chr02:26383308..26383329 (22 bp)
AAAGGTCCGTTAGCGATAAGAATGG
LOC_Os02g43720
Os.49236.1.S1_at--11--891Chr02:26383336..26383360 (25 bp)
AGGCCATCAATCAAGGCATGGAGGT
LOC_Os02g43720
Os.49236.1.S1_at--387--10751Chr02:26383505..26383529 (25 bp)
TTGCAAGTTGCTTTCAATTGAGCTT
LOC_Os02g43720
Os.49236.1.S1_at--724--3531Chr02:26383534..26383558 (25 bp)
CATCCAGAAGGGTTGAGCAGGTTAT
LOC_Os02g43720
Os.49236.1.S1_at--916--6471Chr02:26383612..26383636 (25 bp)
GATACATCTGCCAATTCATGCTACA
LOC_Os02g43720
Os.49236.1.S1_at--569--4391Chr02:26383621..26383645 (25 bp)
GCCAATTCATGCTACATTTTATCAA
LOC_Os02g43720
Target Sequence 
TAATATTCACTGGTCGTAGATTCGATGCAGTAGAAGCTGTAACCATGGGAGTAGTAAACTACTGTGTTCCCGCTGGGGAG
GCTTATAAAAGGGCTCTTGAACTTGCCCAGGAGATAAATCAGAAAGGTCCGTTAGCGATAAGAATGGNTAAGAAGGCCAT
CAATCAAGGCATGGAGGTAGNTCTGTCCGCCGGATTGGCTGTCNAANAAGAATGNTACGAGCAAGTTNTGCACACTCAAG
ATCGTCTTNAAGGTCTAGCTGCATTTGNTGAGAAAAGGAANCCTGTATACACAGGGAAATAAGGTTGTAAATGGTGTTAA
AATTGCAAGTTGCTTTCAATTGAGCTTNTCACATCCAGAAGGGTTGAGCAGGTTATTTTNANACTTTCTACNGTGTTCAT
ATCTTTCNCCATACATGTAAGAAGANCAAGATACATCTGCCAATTCATGCTACATTTTATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis