Browse Element(s) Details


OsAffx.2950.1.S1_at

Description tigr:9630.m04217
TID=OsAffx.2950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4376010/11Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43700Os.1344.1.S1_at11/112+26373777..26375739Lipase family protein, expressed
LOC_Os02g43710OsAffx.24710.1.S1_at10/112+26376480..26379707enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43720Os.49236.1.S1_at10/112+26380632..26383677enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43730OsAffx.24711.1.S1_at11/112+26384935..26385175hypothetical protein
LOC_Os02g43740Os.54104.1.S1_at11/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740Os.46554.2.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740OsAffx.2666.1.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43750Os.52763.1.S1_at11/112+26390632..26397394Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_s_at11/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760Os.1349.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43770OsAffx.24712.1.S1_at11/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43770OsAffx.24712.2.S1_x_at2/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43780OsAffx.12481.1.S1_at11/112+26407575..26409920hAT family dimerisation domain containing protein
LOC_Os02g43790Os.53660.1.S1_at11/112+26416316..26417616AP2 domain containing protein, expressed
LOC_Os02g43800OsAffx.22848.4.S1_at2/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.4.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.3.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2950.1.S1_at--405--1011Chr02:26400002..26400026 (25 bp)
AGGATTGCACTATTACTGTACTGGA
LOC_Os02g43760
OsAffx.2950.1.S1_at--82--1971Chr02:26400016..26400040 (25 bp)
ACTGTACTGGAAATTTTGCTAGTTG
LOC_Os02g43760
OsAffx.2950.1.S1_at--467--10731Chr02:26400031..26400055 (25 bp)
TTGCTAGTTGAATCTACTATTGTAG
LOC_Os02g43760
OsAffx.2950.1.S1_at--276--3731Chr02:26400044..26400068 (25 bp)
CTACTATTGTAGAATTTGCTGAACT
LOC_Os02g43760
OsAffx.2950.1.S1_at--1016--5211Chr02:26400055..26400079 (25 bp)
GAATTTGCTGAACTAGATGTGTTAG
LOC_Os02g43760
OsAffx.2950.1.S1_at--477--1311Chr02:26400069..26400400 (25 bp)
AGATGTGTTAGTTCTGAGGTTGCAT
LOC_Os02g43760
OsAffx.2950.1.S1_at--518--9471Chr02:26400392..26400412 (21 bp)
TCTGAGGTTGCATCAATGTGCTTTT
LOC_Os02g43760
OsAffx.2950.1.S1_at--371--4971Chr02:26400397..26400421 (25 bp)
GCATCAATGTGCTTTTAGCCTTTTA
LOC_Os02g43760
OsAffx.2950.1.S1_at--481--9991Chr02:26400412..26400436 (25 bp)
TAGCCTTTTACTAACAATACAGAAC
LOC_Os02g43760
OsAffx.2950.1.S1_at--804--2411Chr02:26400424..26400506 (25 bp)
AACAATACAGAACACCTGGGATTTG
LOC_Os02g43760
OsAffx.2950.1.S1_at--783--3411NONE
CAGAACACCTGGGATTTGAGCAAGA
NONE
Target Sequence 
AGGATTGCACTATTACTGTACTGGAAATTTTGCTAGTTGAATCTACTATTGTAGAATTTGCTGAACTAGATGTGTTAGTT
CTGAGGTTGCATCAATGTGCTTTTAGCCTTTTACTAACAATACAGAACACCTGGGATTTGAGCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2950.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis