Browse Element(s) Details


Os.1349.1.S1_at

Description gb:AK066320.1
DB_XREF= gi:32976338
TID=Os.1349.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.1349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013066H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013066H16, full insert sequence.
FL= gb:AK066320.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4376010/11Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43700Os.1344.1.S1_at11/112+26373777..26375739Lipase family protein, expressed
LOC_Os02g43710OsAffx.24710.1.S1_at10/112+26376480..26379707enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43720Os.49236.1.S1_at10/112+26380632..26383677enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43730OsAffx.24711.1.S1_at11/112+26384935..26385175hypothetical protein
LOC_Os02g43740Os.54104.1.S1_at11/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740Os.46554.2.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740OsAffx.2666.1.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43750Os.52763.1.S1_at11/112+26390632..26397394Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_s_at11/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760Os.1349.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43770OsAffx.24712.1.S1_at11/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43770OsAffx.24712.2.S1_x_at2/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43780OsAffx.12481.1.S1_at11/112+26407575..26409920hAT family dimerisation domain containing protein
LOC_Os02g43790Os.53660.1.S1_at11/112+26416316..26417616AP2 domain containing protein, expressed
LOC_Os02g43800OsAffx.22848.4.S1_at2/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.4.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.3.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0005622cellular_componentintracellular
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1349.1.S1_at--550--6471Chr02:26403387..26403411 (25 bp)
GATAAATGAGCGTTAGACCTTTTTC
LOC_Os02g43760
Os.1349.1.S1_at--30--5851Chr02:26403402..26403426 (25 bp)
GACCTTTTTCATTTCCATAGGCATA
LOC_Os02g43760
Os.1349.1.S1_at--535--10191Chr02:26403413..26403437 (25 bp)
TTTCCATAGGCATACTACCGAAGGG
LOC_Os02g43760
Os.1349.1.S1_at--446--2331Chr02:26403465..26403489 (25 bp)
AAAGTAGTTTGCTTGCTCTTTGCAG
LOC_Os02g43760
Os.1349.1.S1_at--616--1191Chr02:26403467..26403491 (25 bp)
AGTAGTTTGCTTGCTCTTTGCAGGG
LOC_Os02g43760
Os.1349.1.S1_at--349--10451Chr02:26403495..26403519 (25 bp)
TTAGATCATAGACCAATGTGTTTGG
LOC_Os02g43760
Os.1349.1.S1_at--1120--7071Chr02:26403538..26403562 (25 bp)
GTCAATCGAGAGGTTATCACAGATT
LOC_Os02g43760
Os.1349.1.S1_at--360--8031Chr02:26403590..26403614 (25 bp)
GGAGTACTTAGTTACTAGAGCGATT
LOC_Os02g43760
Os.1349.1.S1_at--370--6771Chr02:26403600..26403624 (25 bp)
GTTACTAGAGCGATTTATACATGAT
LOC_Os02g43760
Os.1349.1.S1_at--898--5871Chr02:26403607..26403631 (25 bp)
GAGCGATTTATACATGATTTCCTTG
LOC_Os02g43760
Os.1349.1.S1_at--277--2111Chr02:26403618..26403642 (25 bp)
ACATGATTTCCTTGTCGTTTTTATA
NONE
Target Sequence 
GATAAATGAGCGTTAGACCTTTTTCATTTCCATAGGCATACTACCGAAGGGGGAAAAATGAGGAACTACAGTTGAATAAA
AGTAGTTTGCTTGCTCTTTGCAGGGGTTTTAGATCATAGACCAATGTGTTTGGATGATGTATTCACGTTTNNGTCAATCG
AGAGGTTATCACAGATTTNAAAATCNTNCCTGTTTTNGGTTTTNGAATGGAGTACTTAGTTACTAGAGCGATTTATACAT
GATTTCCTTGTCGTTTTTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis