Browse Element(s) Details


OsAffx.24710.1.S1_at

Description tigr:9630.m04212
TID=OsAffx.24710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=enoyl-CoA hydratase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4371010/11enoyl-CoA hydratase/isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43680OsAffx.12480.1.S1_at11/112+26358015..26358512hypothetical protein
LOC_Os02g43690OsAffx.24709.1.S1_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690OsAffx.24709.1.S1_x_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690Os.7869.1.S1_x_at5/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43700Os.1344.1.S1_at11/112+26373777..26375739Lipase family protein, expressed
LOC_Os02g43710OsAffx.24710.1.S1_at10/112+26376480..26379707enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43720Os.49236.1.S1_at10/112+26380632..26383677enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43730OsAffx.24711.1.S1_at11/112+26384935..26385175hypothetical protein
LOC_Os02g43740Os.54104.1.S1_at11/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740Os.46554.2.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740OsAffx.2666.1.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43750Os.52763.1.S1_at11/112+26390632..26397394Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_s_at11/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760Os.1349.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43770OsAffx.24712.1.S1_at11/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43770OsAffx.24712.2.S1_x_at2/112+26403968..26406105bZIP protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0007275biological_processdevelopment
GO:0008152biological_processmetabolism
GO:0009062biological_processfatty acid catabolism
GO:0009845biological_processseed germination
GO:0009908biological_processflower development
GO:0042371biological_processvitamin K biosynthesis
GO:0005777cellular_componentperoxisome
GO:0004300molecular_functionenoyl-CoA hydratase activity
GO:0008935molecular_functionnaphthoate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24710.1.S1_at--208--1011Chr02:26377202..26377226 (25 bp)
AGGTTGAGGCTGACGACACCGTGAA
LOC_Os02g43710
OsAffx.24710.1.S1_at--277--4051NONE
CGATCTCAAGGCACTATCTATTCCA
NONE
OsAffx.24710.1.S1_at--691--1431Chr02:26378317..26378341 (25 bp)
AGAACTGGCACTTTCATGCGACCTG
LOC_Os02g43710
OsAffx.24710.1.S1_at--413--611Chr02:26378332..26378352 (21 bp)
ATGCGACCTGCGTATATGTGGAGAA
LOC_Os02g43710
OsAffx.24710.1.S1_at--285--2451Chr02:26378463..26378487 (25 bp)
AAAATGCAACTCTTGGACTGCCAGA
LOC_Os02g43710
OsAffx.24710.1.S1_at--1023--4411Chr02:26378482..26378506 (25 bp)
GCCAGAGACAGGACTTGCTATCATT
LOC_Os02g43710
OsAffx.24710.1.S1_at--684--111Chr02:26379160..26379184 (25 bp)
ATTCACCGGCCGTAGATGTAATGCA
LOC_Os02g43710
OsAffx.24710.1.S1_at--898--9751Chr02:26379195..26379301 (25 bp)
TAATGATGGGACTCGCAAACTACTG
LOC_Os02g43710
OsAffx.24710.1.S1_at--428--8831Chr02:26379323..26379347 (25 bp)
TGAAAAAGCCCTTGAACTTGCCCGC
LOC_Os02g43710
OsAffx.24710.1.S1_at--653--10691Chr02:26379340..26379363 (24 bp)
TTGCCCGCGAGATAGCCCAGAAAGG
LOC_Os02g43710
OsAffx.24710.1.S1_at--898--9111Chr02:26379631..26379655 (25 bp)
TGCTGCACACGGAGGATCGCCTTGA
LOC_Os02g43710
Target Sequence 
AGGTTGAGGCTGACGACACCGTGAAGGTCGTCCTGGTCACGAGCTCCGTGCCTGGAGTTTTCTGCGCAGGCGCCGATCTC
AAGGCACTATCTATTCCAACAATTGCTGTCATTGAAGGAGCTGCTTTGGGTGGTGGGCTAGAACTGGCACTTTCATGCGA
CCTGCGTATATGTGGAGAAAATGCAACTCTTGGACTGCCAGAGACAGGACTTGCTATCATTCCTGGAGCTGGGGGCACAC
AGCGTCTTCCTAGGATTGTTGGAAGGTCCAGAGCGAAGGAGATGATATTCACCGGCCGTAGATGTAATGCAACTGAAGCT
GTAATGATGGGACTCGCAAACTACTGCGTTCCAGCAGGGGAGGCTCATGAAAAAGCCCTTGAACTTGCCCGCGAGATAGC
CCAGAAAGGGCCTCTGGGGATAAGAATGGCCAAGAAGGCCATTGATCAAGGGATGCAGGCAGCAGACATGCCGTCCGCGT
TGGCCGTCGAAGGGGAGTGCTACGAGCAGCTGCTGCACACGGAGGATCGCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis