Browse Element(s) Details


Os.54104.1.S1_at

Description gb:AK101944.1
DB_XREF= gi:32987153
TID=Os.54104.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54104 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033074L09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033074L09, full insert sequence.
FL= gb:AK101944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4374011/11Protein kinase G11A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43690OsAffx.24709.1.S1_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690OsAffx.24709.1.S1_x_at11/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43690Os.7869.1.S1_x_at5/112+26359958..26364640GTP-binding protein YPTM2, putative, expressed
LOC_Os02g43700Os.1344.1.S1_at11/112+26373777..26375739Lipase family protein, expressed
LOC_Os02g43710OsAffx.24710.1.S1_at10/112+26376480..26379707enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43720Os.49236.1.S1_at10/112+26380632..26383677enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os02g43730OsAffx.24711.1.S1_at11/112+26384935..26385175hypothetical protein
LOC_Os02g43740Os.54104.1.S1_at11/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740Os.46554.2.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43740OsAffx.2666.1.S1_x_at1/112+26387151..26390617Protein kinase G11A, putative, expressed
LOC_Os02g43750Os.52763.1.S1_at11/112+26390632..26397394Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_s_at11/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760Os.1349.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43770OsAffx.24712.1.S1_at11/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43770OsAffx.24712.2.S1_x_at2/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43780OsAffx.12481.1.S1_at11/112+26407575..26409920hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54104.1.S1_at--544--4471Chr02:26390176..26390200 (25 bp)
GCCTCCTGGTGAAAGAGCCGCAGCA
LOC_Os02g43740
Os.54104.1.S1_at--72--9171Chr02:26390299..26390323 (25 bp)
TGCCCAGGCATGTCGAGGCCGAGCT
LOC_Os02g43740
Os.54104.1.S1_at--1064--8331Chr02:26390406..26390430 (25 bp)
GGCGGGAAATACCTCGACTTCGAAT
LOC_Os02g43740
Os.54104.1.S1_at--107--3011Chr02:26390445..26390469 (25 bp)
AATGAGTTGCTGAATGCCCAGTCTC
LOC_Os02g43740
Os.54104.1.S1_at--710--4551Chr02:26390460..26390484 (25 bp)
GCCCAGTCTCACTAGTGTGTGCATT
LOC_Os02g43740
Os.54104.1.S1_at--1076--7311Chr02:26390478..26390502 (25 bp)
GTGCATTTTAGGTGTGGTGTCTCAT
LOC_Os02g43740
Os.54104.1.S1_at--264--7751Chr02:26390493..26390517 (25 bp)
GGTGTCTCATTGTAGTTTTGCATGC
LOC_Os02g43740
Os.54104.1.S1_at--884--5011Chr02:26390516..26390540 (25 bp)
GCAGTGTTCCTTCCTGGATCAATGT
LOC_Os02g43740
Os.54104.1.S1_at--422--1731Chr02:26390542..26390566 (25 bp)
ACCAGTGTTAGATTTAGCGCGATTT
LOC_Os02g43740
Os.54104.1.S1_at--788--4111Chr02:26390559..26390583 (25 bp)
CGCGATTTTAGTGCGCAATGTATCC
LOC_Os02g43740
Os.54104.1.S1_at--1022--731Chr02:26390576..26390600 (25 bp)
ATGTATCCAACACTCTGGAACCCAG
LOC_Os02g43740
Target Sequence 
GCCTCCTGGTGAAAGAGCCGCAGCAGCGGCTCGGCGTGAAGCGTGGCGCCGCCGAGATCAAGCAGCACCCCTTCTTCGAG
GGCGTCAACTGGGCGCTCATCCGGTGCAGCACGCCTCCCGAGGTGCCCAGGCATGTCGAGGCCGAGCTGCCGGCCAAGTA
CGGCGTGGCCGAGCCGGTGGCGAGCGGCGGCGGAGGCGGCAAGAGGGTGGTCGGCGCCGAGGTCAGGTCCGGCGGGAAAT
ACCTCGACTTCGAATTCTTTTAGATTATGAATGAGTTGCTGAATGCCCAGTCTCACTAGTGTGTGCATTTTAGGTGTGGT
GTCTCATTGTAGTTTTGCATGCAGTGTTCCTTCCTGGATCAATGTAACCAGTGTTAGATTTAGCGCGATTTTAGTGCGCA
ATGTATCCAACACTCTGGAACCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54104.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis