Browse Element(s) Details


Os.53660.1.S1_at

Description gb:AK073812.1
DB_XREF= gi:32983835
TID=Os.53660.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.53660 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068P11, full insert sequence.
FL= gb:AK073812.1 gb:AK105940.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4379011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43750Os.52763.1.S1_at11/112+26390632..26397394Transcription initiation factor TFIID component TAF4 family protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_s_at11/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760Os.1349.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43760OsAffx.2950.1.S1_at10/112+26399001..26403641Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os02g43770OsAffx.24712.1.S1_at11/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43770OsAffx.24712.2.S1_x_at2/112+26403968..26406105bZIP protein, putative, expressed
LOC_Os02g43780OsAffx.12481.1.S1_at11/112+26407575..26409920hAT family dimerisation domain containing protein
LOC_Os02g43790Os.53660.1.S1_at11/112+26416316..26417616AP2 domain containing protein, expressed
LOC_Os02g43800OsAffx.22848.4.S1_at2/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.4.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43800OsAffx.22848.3.S1_x_at1/112+26423468..26429759retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g43810Os.1352.1.S1_at11/112+26436520..26438702expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009864biological_processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0045941biological_processpositive regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53660.1.S1_at--600--7271Chr02:26416738..26416762 (25 bp)
GTCCATGGCCATGGCACTGGTTCCA
LOC_Os02g43790
Os.53660.1.S1_at--177--191Chr02:26416594..26416618 (25 bp)
ATTTAGCCATCTTGTGCGACTGTGC
LOC_Os02g43790
Os.53660.1.S1_at--591--5732Chr12:1861956..1861975 (20 bp)
GACTGTGCGTGATCGATTGCTGCTT
NONE
Os.53660.1.S1_at--208--4051Chr02:26416564..26416588 (25 bp)
CGATTGCTGCTTGATGGGTCGAGCA
LOC_Os02g43790
Os.53660.1.S1_at--502--811Chr02:26416551..26416575 (25 bp)
ATGGGTCGAGCAAGTTCAGAACAGA
LOC_Os02g43790
Os.53660.1.S1_at--522--5911Chr02:26416528..26416552 (25 bp)
GAGCATCACTCTCTGCAGAATAGAA
LOC_Os02g43790
Os.53660.1.S1_at--516--3011Chr02:26416485..26416509 (25 bp)
AATGCACTGCTCCAAGAAATGTGAC
LOC_Os02g43790
Os.53660.1.S1_at--825--2291Chr02:26416469..26416493 (25 bp)
AAATGTGACGAGTTCCAGGCAATCA
LOC_Os02g43790
Os.53660.1.S1_at--836--931Chr02:26416453..26416477 (25 bp)
AGGCAATCACGCCATTGTTCTTGGA
LOC_Os02g43790
Os.53660.1.S1_at--630--8791Chr02:26416438..26416462 (25 bp)
TGTTCTTGGATGATTGCGCAGCACC
LOC_Os02g43790
Os.53660.1.S1_at--471--7391Chr02:26416376..26416400 (25 bp)
GTGAGGTTTTGTAAGACTTGCACAA
LOC_Os02g43790
Target Sequence 
GTCCATGGCCATGGCACTGGTTCCACCACCGCCACCACCGGCGCAGGCACCGGTGCAGCTCGCCCTCCCGGCCCAGCCAT
GGTTCGCCGCCGGTCCGATCCAGCAGCTGGTGAGCTAAGTGGCGATGTGGTAGTGGTAGTGGTGATTTAGCCATCTTGTG
CGACTGTGCGTGATCGATTGCTGCTTGATGGGTCGAGCAAGTTCAGAACAGAGCATCACTCTCTGCAGAATAGAAGAAGT
TCATGAACAGAGCAATGCACTGCTCCAAGAAATGTGACGAGTTCCAGGCAATCACGCCATTGTTCTTGGATGATTGCGCA
GCACCAGAAAAAAGGGAAAAAAAAGATTGTTTGTGAAATGTGGTGAGGTTTTGTAAGACTTGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53660.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis