Browse Element(s) Details


OsAffx.24705.1.S1_at

Description tigr:9630.m04194
TID=OsAffx.24705.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4357011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43519Os.37365.1.S1_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S2_at11/112+26256778..26259797expressed protein
LOC_Os02g43519Os.37365.1.S3_at11/112+26256778..26259797expressed protein
LOC_Os02g43530OsAffx.24702.1.S1_at11/112+26261565..26261858hypothetical protein
LOC_Os02g43540Os.1327.1.S1_at11/112+26265812..26266785expressed protein
LOC_Os02g43540OsAffx.24703.1.S1_s_at11/112+26265812..26266785expressed protein
LOC_Os02g43550Os.55804.1.S1_at11/112+26269531..26271815cyclin family protein, putative, expressed
LOC_Os02g43560OsAffx.24704.1.S1_s_at11/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43560Os.53486.1.S1_at10/112+26274418..26278019WRKY family transcription factor, putative, expressed
LOC_Os02g43570OsAffx.24705.1.S1_at11/112+26284282..26284741hypothetical protein
LOC_Os02g43580OsAffx.24706.1.S1_at11/112+26287318..26287560hypothetical protein
LOC_Os02g43590Os.5489.1.S1_at11/112+26291016..26295465phagocytosis and cell motility protein ELMO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24705.1.S1_at--802--3811Chr02:26284324..26284348 (25 bp)
CTCCTCTTCTCCCTAGTGACTAGGG
LOC_Os02g43570
OsAffx.24705.1.S1_at--918--2011Chr02:26284342..26284366 (25 bp)
ACTAGGGCAGCGGATCTAGCAGCAT
LOC_Os02g43570
OsAffx.24705.1.S1_at--298--7111Chr02:26284378..26284401 (24 bp)
GTCACCGGATCCAGCTGCCTGGAGT
LOC_Os02g43570
OsAffx.24705.1.S1_at--1010--1591Chr02:26284390..26284643 (25 bp)
AGCTGCCTGGAGTTCTGGATGTGTC
LOC_Os02g43570
OsAffx.24705.1.S1_at--22--4491Chr02:26284394..26284647 (25 bp)
GCCTGGAGTTCTGGATGTGTCGACC
LOC_Os02g43570
OsAffx.24705.1.S1_at--587--1231Chr02:26284629..26284653 (25 bp)
AGTTCTGGATGTGTCGACCGAGCTG
LOC_Os02g43570
OsAffx.24705.1.S1_at--980--7451Chr02:26284639..26284663 (25 bp)
GTGTCGACCGAGCTGTGCATCTAAA
LOC_Os02g43570
OsAffx.24705.1.S1_at--652--7331Chr02:26284653..26284677 (25 bp)
GTGCATCTAAAGGATTTAGCTTGAT
LOC_Os02g43570
OsAffx.24705.1.S1_at--417--4931Chr02:26284671..26284695 (25 bp)
GCTTGATGCTAGAATTGGCTCGATT
LOC_Os02g43570
OsAffx.24705.1.S1_at--623--10871Chr02:26284685..26284709 (25 bp)
TTGGCTCGATTCATCAAGTCAAGCA
LOC_Os02g43570
OsAffx.24705.1.S1_at--1044--8311Chr02:26284687..26284711 (25 bp)
GGCTCGATTCATCAAGTCAAGCACG
LOC_Os02g43570
Target Sequence 
CTCCTCTTCTCCCTAGTGACTAGGGCAGCGGATCTAGCAGCATGGAGGTTGGGGGTCACCGGATCCAGCTGCCTGGAGTT
CTGGATGTGTCGACCGAGCTGTGCATCTAAAGGATTTAGCTTGATGCTAGAATTGGCTCGATTCATCAAGTCAAGCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24705.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis