Browse Element(s) Details


Os.53545.1.S1_at

Description gb:AK073214.1
DB_XREF= gi:32983237
TID=Os.53545.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033015N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033015N07, full insert sequence.
FL= gb:AK073214.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4075011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40710Os.14803.1.S1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.5588.1.A1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_x_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40740Os.53364.1.S1_at11/117+24415688..24417746Heparanase-like protein 1 precursor, putative, expressed
LOC_Os07g40750Os.53545.1.S1_at11/117+24418192..24420620pentatricopeptide, putative, expressed
LOC_Os07g40760OsAffx.32289.1.S1_at1/117+24421050..24426782transposon protein, putative, Mutator sub-class
LOC_Os07g40770OsAffx.16658.1.S1_at11/117+24427608..24431841expressed protein
LOC_Os07g40770Os.46451.1.S1_at1/117+24427608..24431841expressed protein
LOC_Os07g40780OsAffx.16659.1.S1_at11/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40780OsAffx.27050.1.S1_x_at1/117+24437157..24438428Zinc finger, C2H2 type family protein, expressed
LOC_Os07g40790Os.54224.1.S1_x_at11/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.54224.1.S1_at10/117+24444594..24449594cobW protein, putative, expressed
LOC_Os07g40790Os.47385.1.S1_at4/117+24444594..24449594cobW protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53545.1.S1_at--660--1071Chr07:24418750..24418774 (25 bp)
AGGGAAAGATGCCTCCTTCAACCAG
LOC_Os07g40750
Os.53545.1.S1_at--985--2331Chr07:24418662..24418686 (25 bp)
AAAGAATGCCCTATGTGTATATGCT
LOC_Os07g40750
Os.53545.1.S1_at--922--6611Chr07:24418627..24418651 (25 bp)
GTTGGATCCCTAGGCCTGGGATGAT
LOC_Os07g40750
Os.53545.1.S1_at--682--6411Chr07:24418541..24418565 (25 bp)
GATCTGCTGAAAGTTGCTGTGCCAC
LOC_Os07g40750
Os.53545.1.S1_at--435--9131Chr07:24418527..24418551 (25 bp)
TGCTGTGCCACTGAACTCAGATATG
LOC_Os07g40750
Os.53545.1.S1_at--977--5791Chr07:24418499..24418523 (25 bp)
GACGCTTTGTCAAGGGCTCGAATGA
LOC_Os07g40750
Os.53545.1.S1_at--79--6471Chr07:24418426..24418450 (25 bp)
GATAATGTTTCACGAGCTCTCAAGG
LOC_Os07g40750
Os.53545.1.S1_at--351--911Chr07:24418404..24418428 (25 bp)
AGGCTGCTCTTTGGTCTGCACTGAC
LOC_Os07g40750
Os.53545.1.S1_at--467--5112Chr07:24418387..24418411 (25 bp)
GCACTGACACTTTGTTCTTGCTGCA
LOC_Os07g40750
Os.53545.1.S1_at--597--7051Chr07:24418271..24418295 (25 bp)
GTAACATTGTCTGTACCTGAGTACC
LOC_Os07g40750
Os.53545.1.S1_at--565--6791Chr07:24418235..24418259 (25 bp)
GTTATCACTCGATTGGTCACTTTAA
LOC_Os07g40750
Target Sequence 
AGGGAAAGATGCCTCCTTCAACCAGCTGGGCAATTGTGGCAGCTGGCTATGCGGAGAAAGGTGATGCTGCGAAAGCATAT
GAGCTGACAAAGAATGCCCTATGTGTATATGCTCCAAANNACTGGTTGGATCCCTAGGCCTGGGATGATTGAGATGATAC
TTAAGTATCTTGGAGATGAAGGNTGATGTCGAGGNAGGTTGAAATTTTCGTTGATCTGCTGAAAGTTGCTGTGCCACTGA
ACTCAGATATGACTGACGCTTTGTCAAGGGCTCGAATGAGAGAAGAAAAGAAGGTTAAAGATGCAGTGTAAGCACTATGA
TGAAGAAGATAATGTTTCACGAGCTCTCAAGGCTGCTCTTTGGTCTGCACTGACACTTTGTTCTTGCTGCATTTCTTCTT
CTCGTTTTTTTTTCTTTTTTAGGAGAATGTGGGTGGGGGATGGTAACCAAAATGAGATATTATCTGACATACAGTAGTTC
TGGTAACATTGTCTGTACCTGAGTACCTGAGTGAACTTGTTATCACTCGATTGGTCACTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis