Browse Element(s) Details


Os.53546.1.S1_s_at

Description gb:AK073216.1
DB_XREF= gi:32983239
TID=Os.53546.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53546 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033004D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033004D04, full insert sequence.
FL= gb:AK073216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1010011/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g10080Os.10672.1.S1_at11/113+5064765..5069456expressed protein
LOC_Os03g10090Os.12703.1.S1_at11/113+5077358..5079777mannitol transporter, putative, expressed
LOC_Os03g10100Os.53546.1.S1_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.53546.1.S1_s_at11/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10100Os.26868.1.A1_at9/113+5091309..5093451Sugar transporter family protein, expressed
LOC_Os03g10110Os.6372.1.S1_at11/113+5095360..5098165Cupin family protein, expressed
LOC_Os03g10120Os.6749.1.S1_at9/113+5098396..5103730COP9 signalosome complex subunit 4, putative, expressed
LOC_Os03g10140Os.6107.1.A1_at11/113+5113432..5116623Zinc finger, C2H2 type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0005354molecular_functiongalactose transporter activity
GO:0005355molecular_functionglucose transporter activity
GO:0005365molecular_functionmyo-inositol transporter activity
GO:0005403molecular_functionhydrogen:sugar symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
GO:0015148molecular_functionD-xylose transporter activity
GO:0015168molecular_functionglycerol transporter activity
GO:0015575molecular_functionmannitol transporter activity
GO:0015591molecular_functionD-ribose transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53546.1.S1_s_at--795--8911Chr03:5092717..5092741 (25 bp)
TGAGCGGCGCCGTCAGCATGTCCTT
LOC_Os03g10100
Os.53546.1.S1_s_at--839--771Chr03:5092734..5092758 (25 bp)
ATGTCCTTCATCTCGCTCTACAAGG
LOC_Os03g10100
Os.53546.1.S1_s_at--660--2951Chr03:5092755..5092779 (25 bp)
AAGGCCATCACCTTCGCCGGGAGCT
LOC_Os03g10100
Os.53546.1.S1_s_at--909--3971Chr03:5092808..5092832 (25 bp)
CGGGTGGGTGTTCATGTTCTTCTTC
LOC_Os03g10100
Os.53546.1.S1_s_at--3--951Chr03:5092851..5092875 (25 bp)
AGGAGCCTGGAGGACACCGTCAAAC
LOC_Os03g10100
Os.53546.1.S1_s_at--727--4011Chr03:5092868..5092892 (25 bp)
CGTCAAACTCTTCGGCGGCGATGAA
LOC_Os03g10100
Os.53546.1.S1_s_at--791--7591Chr03:5092932..5092956 (25 bp)
GGGCAGAACAAGTCCACTGAGTTGA
LOC_Os03g10100
Os.53546.1.S1_s_at--525--6051Chr03:5092950..5092974 (25 bp)
GAGTTGACTACTCAGCAGTGAGCCA
LOC_Os03g10100
Os.53546.1.S1_s_at--487--3391Chr03:5092962..5092986 (25 bp)
CAGCAGTGAGCCAGTAACCAGTGAG
LOC_Os03g10100
Os.53546.1.S1_s_at--1012--6931Chr03:5093000..5093024 (25 bp)
GTAGTACATGATCTACTCAGCAGTG
LOC_Os03g10100
Os.53546.1.S1_s_at--877--9651Chr03:5093016..5093040 (25 bp)
TCAGCAGTGACCAGTGAGGGCTACT
LOC_Os03g10100
Target Sequence 
TGAGCGGCGCCGTCAGCATGTCCTTCATCTCGCTCTACAAGGCCATCACCTTCGCCGGGAGCTTCTACCTCTACGCCGGC
ATAGCTGCGGCCGGGTGGGTGTTCATGTTCTTCTTCCTGCCGGAGACGCAAGGCAGGAGCCTGGAGGACACCGTCAAACT
CTTCGGCGGCGATGAACGTGACGCGAACGGTACTGTGGGAAGGGAAGACGGCCATGGGCAGAACAAGTCCACTGAGTTGA
CTACTCAGCAGTGAGCCAGTAACCAGTGAGGACTACTAGTACAGTAGTACATGATCTACTCAGCAGTGACCAGTGAGGGC
TACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53546.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis