Browse Element(s) Details


Os.53554.1.S1_at

Description gb:AK073259.1
DB_XREF= gi:32983282
TID=Os.53554.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53554 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033026J20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033026J20, full insert sequence.
FL= gb:AK073259.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4397011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43920Os.50772.1.S1_at8/115+25472959..25478376Auxin response factor family protein, expressed
LOC_Os05g43930Os.13003.1.S1_at11/115+25481311..25483018O-methyltransferase ZRP4, putative, expressed
LOC_Os05g43940Os.48215.1.A1_at4/115+25486052..25487650O-methyltransferase ZRP4, putative
LOC_Os05g43940Os.13003.1.S1_at2/115+25486052..25487650O-methyltransferase ZRP4, putative
LOC_Os05g43950Os.27201.1.S1_at11/115+25492433..25496551expressed protein
LOC_Os05g43950Os.18072.1.S1_x_at1/115+25492433..25496551expressed protein
LOC_Os05g43960OsAffx.15096.1.S1_at11/115+25496926..25498559No apical meristem protein, expressed
LOC_Os05g43970Os.53554.1.S1_at11/115+25498862..25503369expressed protein
LOC_Os05g43980NANA5+25506325..25507085hypothetical protein
LOC_Os05g43990NANA5+25508699..25512244retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44000NANA5+25514674..25518118retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44010NANA5+25518435..25521378retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g44020Os.52467.1.S1_at11/115+25525086..25527617expressed protein
LOC_Os05g44020Os.52467.1.S1_x_at11/115+25525086..25527617expressed protein
LOC_Os05g44020OsAffx.15097.1.S1_at1/115+25525086..25527617expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53554.1.S1_at--345--8951Chr05:25501152..25501176 (25 bp)
TGACTAATTTTGCTCTGGTACAGAT
LOC_Os05g43970
Os.53554.1.S1_at--822--471Chr05:25501186..25501209 (24 bp)
ATCTGATCTCTCCAGGCGTGAAAGA
LOC_Os05g43970
Os.53554.1.S1_at--64--5891Chr05:25502634..25502658 (25 bp)
GAGCGTCTTACTTTGATACGCCAAC
LOC_Os05g43970
Os.53554.1.S1_at--88--4591Chr05:25503067..25503091 (25 bp)
GCGCAAGTGACCTGCCAAGCTATTG
LOC_Os05g43970
Os.53554.1.S1_at--886--5211Chr05:25503102..25503126 (25 bp)
GAATTTTGACCCGAGCTGTGATAGC
LOC_Os05g43970
Os.53554.1.S1_at--605--8671Chr05:25503118..25503142 (25 bp)
TGTGATAGCTCAACGTTACCTTCCT
LOC_Os05g43970
Os.53554.1.S1_at--1116--6771Chr05:25503132..25503156 (25 bp)
GTTACCTTCCTATGCTTCTGAATTC
LOC_Os05g43970
Os.53554.1.S1_at--703--8831Chr05:25503157..25503181 (25 bp)
TGATATCACTTGAACTCCCCTATAT
LOC_Os05g43970
Os.53554.1.S1_at--758--4391Chr05:25503236..25503260 (25 bp)
GCCACGGGTAGATGCGACTTTTGAG
LOC_Os05g43970
Os.53554.1.S1_at--273--51Chr05:25503306..25503330 (25 bp)
ATTGTCTACTATTTGTCCTCATGCC
LOC_Os05g43970
Os.53554.1.S1_at--850--4511Chr05:25503328..25503352 (25 bp)
GCCGCGGTATTTTCGTTATGGTATT
LOC_Os05g43970
Target Sequence 
TGACTAATTTTGCTCTGGTACAGATTGGTAGGACATCTGATCTCTCCAGGCGTGAAAGAGAGGAGCTTGAAAAACAGAAA
TCTCATGAGCGTCACATGAAGCTCCAGGAGCAAGGGAAAACTGAACAGGCTAGGAAAGATTTAGAGCGTCTTACTTTGAT
ACGCCAACAGAGGGCGGAAGCTGCAAAGAAGCGTGAAGAGGAAAAGGCTGCCAAGGACGAGAGGAAGGCTGAGGCGCGCA
AGTGACCTGCCAAGCTATTGGAACAAGAAAGAATTTTGACCCGAGCTGTGATAGCTCAACGTTACCTTCCTATGCTTCTG
AATTCTGATATCACTTGAACTCCCCTATATTTATTTACCGTAGGAATAGTATGCAGTAGTTATGTAAAGTGGTTGTGGTC
GACCGCCACGGGTAGATGCGACTTTTGAGCTTGGAGAGGTAGTAGGAACTTGGTGGTAGCAACTTTGGTGAACAATTGTC
TACTATTTGTCCTCATGCCGCGGTATTTTCGTTATGGTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis