Browse Element(s) Details


Os.5357.1.S1_at

Description gb:AK073300.1
DB_XREF= gi:32983323
TID=Os.5357.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033027E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033027E15, full insert sequence.
FL= gb:AK073300.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4886011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48840OsAffx.26532.1.S1_at11/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48840Os.6766.1.S1_s_at10/114+28905501..28907881Uncharacterised protein family containing protein, expressed
LOC_Os04g48850Os.49507.1.S1_at11/114+28912714..289155861-aminocyclopropane-1-carboxylate synthase, putative, expressed
LOC_Os04g48860Os.5357.1.S1_at11/114+28930098..28931792expressed protein
LOC_Os04g48870OsAffx.26533.1.S1_at11/114+28933894..28934866expressed protein
LOC_Os04g48870Os.24786.1.S1_s_at11/114+28933894..28934866expressed protein
LOC_Os04g48880Os.8569.1.S1_at11/114+28938119..28940187beta-carotene hydroxylase, putative, expressed
LOC_Os04g48890OsAffx.26534.1.S1_at11/114+28941787..28942143hypothetical protein
LOC_Os04g48900NANA4+28949026..28951725retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os04g48910NANA4+28952146..28954859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g48920NANA4+28955475..28958400retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5357.1.S1_at--597--3071Chr04:28930969..28930993 (25 bp)
AATCAATTGGACACTGGCGTTTCAG
LOC_Os04g48860
Os.5357.1.S1_at--548--5211Chr04:28931142..28931166 (25 bp)
GAATATTACTTCGACGCTGGATCAG
LOC_Os04g48860
Os.5357.1.S1_at--1114--5931Chr04:28931339..28931363 (25 bp)
GAGCACTGGAACGTCCCCAAGATGG
LOC_Os04g48860
Os.5357.1.S1_at--768--2791Chr04:28931357..28931381 (25 bp)
AAGATGGCACTCCTGCGGCAGATTT
LOC_Os04g48860
Os.5357.1.S1_at--44--6551Chr04:28931377..28931401 (25 bp)
GATTTTCAGGCCGAGTCGATGGGTA
LOC_Os04g48860
Os.5357.1.S1_at--660--8991Chr04:28931423..28931447 (25 bp)
TGAAGCATCGGTGTTCATCGTGAAC
LOC_Os04g48860
Os.5357.1.S1_at--886--2011Chr04:28931500..28931524 (25 bp)
ACTAGTACCTTGCATGGACCGCATG
LOC_Os04g48860
Os.5357.1.S1_at--1111--5811Chr04:28931516..28931540 (25 bp)
GACCGCATGGTAGCCTATCAGGTTA
LOC_Os04g48860
Os.5357.1.S1_at--929--2351Chr04:28931622..28931646 (25 bp)
AAACCGTATTGGGACATCCTTCAAT
LOC_Os04g48860
Os.5357.1.S1_at--399--7931Chr04:28931694..28931718 (25 bp)
GGATATCTGGAATCGTTTCTCGGAT
LOC_Os04g48860
Os.5357.1.S1_at--1139--3051Chr04:28931738..28931762 (25 bp)
AATCTCTGTAGTTTCTCTTGTGCAA
LOC_Os04g48860
Target Sequence 
AATCAATTGGACACTGGCGTTTCAGCTGCGTCATGNTCGTTCCCCTGGAGGCCTATTCTGTCCGCGACCGGGTACACNTG
AATATTACTTCGACGCTGGATCAGGAAAGGTGTNCAGGCATGTCGAGCACTGGAACGTCCCCAAGATGGCACTCCTGCGG
CAGATTTTCAGGCCGAGTCGATGGGTATGGGAGAAACGCACCGANGAATGAAGCATCGGTGTTCATCGTGAACTAGGATT
ATGCATGATTATACTCAATGGTACCTGGTTAGGGGCATTAGTAGTACTAGTACCTTGCATGGACCGCATGGTAGCCTATC
AGGTTAAGGCTGCTCGCTCNTGTTGTACAGACTACAGACTACAAGCAGTAATAGATCGAACCATAATCATTTTAGTTCTG
GGAGATTAAACCGTATTGGGACATCCTTCAATTATCTGTTCTAATCTAAACAACGCCAACAGAAGGATAATTAGCGATGG
GATATCTGGAATCGTTTCTCGGATGAGAGTCTGAACTCTGAATAATCTCTGTAGTTTCTCTTGTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis