Browse Element(s) Details


Os.53584.1.S1_at

Description gb:AK073410.1
DB_XREF= gi:32983433
TID=Os.53584.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53584 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033039K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039K17, full insert sequence.
FL= gb:AK073410.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1419011/11Spermine/spermidine synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14160NANA2+7751298..7753199Peroxidase 52 precursor, putative, expressed
LOC_Os02g14170Os.10428.1.S1_at11/112+7760923..7762488Peroxidase precursor, putative, expressed
LOC_Os02g14180NANA2+7770037..7771053Peroxidase family protein
LOC_Os02g14190Os.53584.1.S1_at11/112+7772398..7776160Spermine/spermidine synthase family protein, expressed
LOC_Os02g14210OsAffx.24244.1.S1_at11/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210Os.50043.1.A1_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14210OsAffx.22711.4.A1_x_at1/112+7781740..7787429retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.5.S1_x_at3/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.21171.3.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14220OsAffx.20729.1.S1_x_at1/112+7789660..7794499retrotransposon protein, putative, unclassified
LOC_Os02g14230OsAffx.12031.1.S1_at9/112+7796193..7798258hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006596biological_processpolyamine biosynthesis
GO:0008295biological_processspermidine biosynthesis
GO:0009826biological_processunidimensional cell growth
GO:0009926biological_processauxin polar transport
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0005737cellular_componentcytoplasm
GO:0004766molecular_functionspermidine synthase activity
GO:0016768molecular_functionspermine synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53584.1.S1_at--899--7571Chr02:7773108..7773276 (25 bp)
GGGCTGGGTCATGGCATCAGATTAT
LOC_Os02g14190
Os.53584.1.S1_at--109--4291Chr02:7773000..7773024 (25 bp)
CCTCATTTCCTCTACCATATTGAAC
LOC_Os02g14190
Os.53584.1.S1_at--275--5891Chr02:7772804..7772997 (25 bp)
GAGCGTTTACCAGTCGCTGTTGAAT
LOC_Os02g14190
Os.53584.1.S1_at--870--5271Chr02:7772783..7772807 (25 bp)
GAATGAGACGCATGTGTACACCGAG
LOC_Os02g14190
Os.53584.1.S1_at--601--8251Chr02:7772726..7772750 (25 bp)
GGCACGTTGTGCTTGAATCCCATAT
LOC_Os02g14190
Os.53584.1.S1_at--973--5251Chr02:7772712..7772736 (25 bp)
GAATCCCATATCTTACACGCATAAA
LOC_Os02g14190
Os.53584.1.S1_at--820--1211Chr02:7772597..7772621 (25 bp)
AGTTAGCTACTAGATCTCCAGATCA
LOC_Os02g14190
Os.53584.1.S1_at--792--8631Chr02:7772529..7772553 (25 bp)
TGTGAAGAACTTTTTTCGCCTTTGT
LOC_Os02g14190
Os.53584.1.S1_at--69--10311Chr02:7772516..7772540 (25 bp)
TTTCGCCTTTGTTTTCCTACGTGAG
LOC_Os02g14190
Os.53584.1.S1_at--707--9051Chr02:7772428..7772452 (25 bp)
TGCATGTTTCACTCTTTTTGTTCAG
LOC_Os02g14190
Os.53584.1.S1_at--500--3011Chr02:7772399..7772423 (25 bp)
AATGAATGGTAGCTCTCTTGACAAG
LOC_Os02g14190
Target Sequence 
GGGCTGGGTCATGGCATCAGATTATCCATTTAGCATGAATGCTCAGCAAATCAATGAGAGGATCAAGGAGAGGATAGATG
GGGAGCTGGTGTACTTGAGTGGGGAGTCCCTCATTTCCTCTACCATATTGAACAAGAGCGTTTACCAGTCGCTGTTGAAT
GAGACGCATGTGTACACCGAGGATGATGCAAGGTTCATCTACGGACATGGAAGGGCACGTTGTGCTTGAATCCCATATCT
TACACGCATAAACACCTGAGCAAAATGGTGATAAATTAGTAGCTATTTTCCAACTTAAGAGGTCGAGATGCACAAGTGTG
GATAGCAAGTCTGAAATTGATCAGTTAGCTACTAGATCTCCAGATCAACCGATCGAGAACAGAAAAAAGAACAAGTGATC
GATGCAACTTTGTGAAGAACTTTTTTCGCCTTTGTTTTCCTACGTGAGGCGAGGAAAGAACTGAAAAAGAACTAGAATGG
AATAAAAACTATATAATGCTCTCCATGCATGTGCATGTTTCACTCTTTTTGTTCAGCGTAAATGAATGGTAGCTCTCTTG
ACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis