Browse Element(s) Details


Os.53610.1.S1_at

Description gb:AK073576.1
DB_XREF= gi:32983599
TID=Os.53610.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046M12, full insert sequence.
FL= gb:AK073576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1627011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g16240OsAffx.24649.3.S1_at10/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16240OsAffx.24649.1.S1_at5/112+9233932..9238109transposon protein, putative, unclassified
LOC_Os02g16250OsAffx.2640.1.S1_at11/112+9238437..9239234NBS-LRR disease resistance protein, putative
LOC_Os02g16260OsAffx.24277.1.S1_at9/112+9240038..9243851Xa1, putative
LOC_Os02g16270Os.53610.1.S1_at11/112+9257996..9262612NB-ARC domain containing protein, expressed
LOC_Os02g16280OsAffx.25367.1.S1_at1/112+9263254..9267577retrotransposon, putative, centromere-specific
LOC_Os02g16290OsAffx.28402.1.S1_at1/112+9268756..9272208transposon protein, putative, Mutator sub-class
LOC_Os02g16300NANA2+9272554..9274078expressed protein
LOC_Os02g16310OsAffx.31695.1.S1_at2/112+9277216..9278748hypothetical protein
LOC_Os02g16320NANA2+9280471..9281274retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g16330OsAffx.21062.1.S1_at11/112+9284786..9290815NB-ARC domain containing protein
LOC_Os02g16330OsAffx.21062.1.S1_x_at11/112+9284786..9290815NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53610.1.S1_at--974--4211Chr02:9261967..9261991 (25 bp)
CCGCGAGTTGCGATTCAGGTATGAT
LOC_Os02g16270
Os.53610.1.S1_at--761--5591Chr02:9262060..9262084 (25 bp)
GAAATTCCGGAAGTGCCTTCGTCTG
LOC_Os02g16270
Os.53610.1.S1_at--115--6671Chr02:9262102..9262126 (25 bp)
GTTGCATTGCCTTTATTCTCTCTAT
LOC_Os02g16270
Os.53610.1.S1_at--528--2531Chr02:9262128..9262152 (25 bp)
AACTAAATATCGCTGGATGTCCGGA
LOC_Os02g16270
Os.53610.1.S1_at--458--6271Chr02:9262143..9262167 (25 bp)
GATGTCCGGAAATCATGTCGCTGCC
LOC_Os02g16270
Os.53610.1.S1_at--636--9311Chr02:9262179..9262203 (25 bp)
TCCCGGTCTCATTGGAACGTCTAAG
LOC_Os02g16270
Os.53610.1.S1_at--95--1271Chr02:9262264..9262288 (25 bp)
AGATTTACATATACGGCTCCACTAG
LOC_Os02g16270
Os.53610.1.S1_at--113--91Chr02:9262425..9262449 (25 bp)
ATTGCCTCATCTGGAACCTTTCAGA
LOC_Os02g16270
Os.53610.1.S1_at--199--6071Chr02:9262448..9262472 (25 bp)
GAGTTCTTCCATCATCGTATAGCTG
LOC_Os02g16270
Os.53610.1.S1_at--571--4391Chr02:9262534..9262558 (25 bp)
GCCACTTTGGCTTTCAGACATAATG
LOC_Os02g16270
Os.53610.1.S1_at--574--6271Chr02:9262559..9262583 (25 bp)
GATGTCCTTTGTCTATTATCCAATC
LOC_Os02g16270
Target Sequence 
CCGCGAGTTGCGATTCAGGTATGATTTGTGGATGGAAAGCTTCACAGAAGAACAGGAAGAGGCACTTCAGCTCCTCACCT
CCCTCCAATGCCTGAAATTCCGGAAGTGCCTTCGTCTGCAGTCCCTCCCCGAAGGGTTGCATTGCCTTTATTCTCTCTAT
AAACTAAATATCGCTGGATGTCCGGAAATCATGTCGCTGCCCAAGGACGGCTTCCCGGTCTCATTGGAACGTCTAAGAAT
ACGAGACTGCAGCATCGATTTAATGGTTCAAGTCAAGGAATTAGAAGCATCAAACCCAGATTTACATATACGGCTCCACT
AGCAAACTTACCACCCAAGCTATCCAGCACCATTGCCTCATCTGGAACCTTTCAGAGTTCTTCCATCATCGTATAGCTGA
CAATGTAAATGCGAATTACACGACAACACATGAAGATAAAGAGCTCTGGATGGCAGAGCAGCCACTTTGGCTTTCAGACA
TAATGGATGTCCTTTGTCTATTATCCAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis