Browse Element(s) Details

Os.53611.1.S1_at

Description

gb:AK073579.1
DB_XREF= gi:32983602
TID=Os.53611.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53611 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048H06, full insert sequence.
FL= gb:AK073579.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g49050	11/11	hAT dimerisation domain-containing protein, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g49000	Os.49707.2.S1_x_at	11/11	6	+	29695562..29702209	expressed protein
LOC_Os06g49000	Os.49707.1.S1_at	11/11	6	+	29695562..29702209	expressed protein
LOC_Os06g49010	Os.11215.1.S1_a_at	10/11	6	+	29702560..29707689	SBP domain containing protein, expressed
LOC_Os06g49010	OsAffx.2442.1.S1_x_at	1/11	6	+	29702560..29707689	SBP domain containing protein, expressed
LOC_Os06g49020	Os.49860.1.S1_at	11/11	6	+	29710344..29711617	26S proteasome non-ATPase regulatory subunit 14, putative, expressed
LOC_Os06g49030	Os.11089.1.S1_at	11/11	6	+	29712471..29715990	expressed protein
LOC_Os06g49040	Os.5279.1.S1_at	11/11	6	+	29722468..29726091	myb-like DNA-binding domain, SHAQKYF class family protein, expressed
LOC_Os06g49050	Os.53611.1.S1_at	11/11	6	+	29726337..29730922	hAT dimerisation domain-containing protein, putative, expressed
LOC_Os06g49060	Os.54378.1.S1_at	11/11	6	+	29732807..29736190	ternary complex factor MIP1, putative, expressed
LOC_Os06g49070	OsAffx.15991.1.S1_at	11/11	6	+	29736486..29737309	expressed protein
LOC_Os06g49080	Os.54886.1.S1_at	11/11	6	+	29737882..29741501	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g49090	Os.8048.1.S1_at	11/11	6	+	29743318..29749634	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49090	Os.54886.1.S1_at	2/11	6	+	29743318..29749634	transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g49100	OsAffx.28180.1.S1_s_at	11/11	6	+	29753547..29755379	leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100	Os.54530.1.S1_x_at	11/11	6	+	29753547..29755379	leucine-rich repeat family protein, putative, expressed
LOC_Os06g49100	Os.54530.1.S1_at	11/11	6	+	29753547..29755379	leucine-rich repeat family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53611.1.S1_at--1145--221	1	Chr06:29730359..29730380 (22 bp)	ACAAGTTCGTTGGTGGTCGGCACAT	LOC_Os06g49050
Os.53611.1.S1_at--38--241	1	Chr06:29730430..29730454 (25 bp)	AAACATGCTTCGGTGCTTCCATATA	LOC_Os06g49050
Os.53611.1.S1_at--445--395	1	Chr06:29730465..29730489 (25 bp)	CGGAGCATATCCGAGCAGCTGCATG	LOC_Os06g49050
Os.53611.1.S1_at--1004--119	1	Chr06:29730535..29730559 (25 bp)	AGTATCTACACTACAATCTTCGCCT	LOC_Os06g49050
Os.53611.1.S1_at--293--361	1	Chr06:29730564..29730588 (25 bp)	CATTGTGAGCCATGCGTACGCGGTG	LOC_Os06g49050
Os.53611.1.S1_at--907--573	1	Chr06:29730633..29730657 (25 bp)	GACTGGATCTCATCAGGGCAGACCA	LOC_Os06g49050
Os.53611.1.S1_at--687--503	1	Chr06:29730650..29730674 (25 bp)	GCAGACCACCTCCTATTACAAGTGA	LOC_Os06g49050
Os.53611.1.S1_at--686--1033	1	Chr06:29730701..29730725 (25 bp)	TTTCAGCTCTTTTTTGGGTCTTTCT	LOC_Os06g49050
Os.53611.1.S1_at--796--15	1	Chr06:29730729..29730753 (25 bp)	ATTATGCTTATCCTCCAGACTCTGA	LOC_Os06g49050
Os.53611.1.S1_at--1019--225	1	Chr06:29730819..29730843 (25 bp)	AAATCACCTCTGTAGTTTAACCATG	LOC_Os06g49050
Os.53611.1.S1_at--281--11	1	Chr06:29730887..29730911 (25 bp)	ATTACCTGTGTTGAATTACCCTCCT	LOC_Os06g49050

Target Sequence

ACAAGTTCGTTGGTGGTCGGCACATGGGACTGACACCCCTGAGCTGCAAACGTTTGCGATCAGGATCTTGAGCCAAACAT
GCTTCGGTGCTTCCATATACAACATTGACCGGAGCATATCCGAGCAGCTGCATGTTGTGAAGAGGACATATCCTGAGCAA
GAGAGGTTCAGAACGATGGAGTATCTACACTACAATCTTCGCCTCGCCCATTGTGAGCCATGCGTACGCGGTGCTTCTGG
GGCTCAACAGCATAGTAGGCTCACTAGTCAACTGGGTGACTGGATCTCATCAGGGCAGACCACCTCCTATTACAAGTGAG
AAAGTGCTATGGTCTGGAGCAGTGCTTTCAGCTCTTTTTTGGGTCTTTCTGGCATTATGCTTATCCTCCAGACTCTGACA
AAGCATTTCTTAGTGCTCGTACTATGCTGTTTCTTTGTTGGATTACCTGGTTTAGTTTCAGTCAAATCACCTCTGTAGTT
TAACCATGTTACAAAATGGAAAACGACAGGTGAACATAGTGTTTTGGTGGCATTACCTGTGTTGAATTACCCTCCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis