Browse Element(s) Details


Os.53613.1.S1_at

Description gb:AK073586.1
DB_XREF= gi:32983609
TID=Os.53613.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050D05, full insert sequence.
FL= gb:AK073586.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5584010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55800Os.8266.1.A1_at11/113+31703932..31705926Cytochrome P450 74A1, chloroplast precursor, putative, expressed
LOC_Os03g55810NANA3+31714944..31715444hypothetical protein
LOC_Os03g55820Os.7451.1.S1_at11/113+31717263..31720334Thioredoxin family protein, expressed
LOC_Os03g55830Os.57276.1.S1_at11/113+31724092..31727019transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g55840Os.53613.1.S1_at10/113+31727027..31728145expressed protein
LOC_Os03g55850Os.8017.1.S1_at11/113+31729548..31732200cold acclimation protein COR413-PM1, putative, expressed
LOC_Os03g55860Os.46012.2.S1_x_at8/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.27088.1.A1_x_at6/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.46012.3.S1_x_at4/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.10263.1.S1_at2/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.54691.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860Os.45902.1.A1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.22442.1.S1_x_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55860OsAffx.9929.1.S1_at1/113+31733001..31739241retrotransposon protein, putative, unclassified
LOC_Os03g55870Os.17653.1.S1_at11/113+31741251..31743092integral membrane protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006464biological_processprotein modification
GO:0017118molecular_functionlipoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53613.1.S1_at--1160--2091Chr03:31727596..31727620 (25 bp)
ACATGATCTCCACGCTGTACTGCAA
LOC_Os03g55840
Os.53613.1.S1_at--248--2751Chr03:31727276..31727300 (25 bp)
AAGAACCTCCGCATCTGCGGTGACT
LOC_Os03g55840
Os.53613.1.S1_at--19--7771Chr03:31727258..31727282 (25 bp)
GGTGACTGCCACAATGCCGTCAAGC
LOC_Os03g55840
Os.53613.1.S1_at--794--9671Chr03:31727221..31727245 (25 bp)
TCACCGGCCGCGAGATTGTCGTCAG
LOC_Os03g55840
Os.53613.1.S1_at--263--7211Chr03:31727204..31727228 (25 bp)
GTCGTCAGGGACAACAAGCGCTTCC
LOC_Os03g55840
Os.53613.1.S1_at--495--3811Chr03:31727157..31727181 (25 bp)
CTCCTGCGGCGATTACTGGTGAGGT
LOC_Os03g55840
Os.53613.1.S1_at--877--1951Chr03:31727143..31727167 (25 bp)
ACTGGTGAGGTGAGCCATCTCTCCA
LOC_Os03g55840
Os.53613.1.S1_at--1100--1951Chr03:31727113..31727137 (25 bp)
ACTGTCATTGACACCCATTGTTATA
LOC_Os03g55840
Os.53613.1.S1_at--278--5211Chr03:31727085..31727109 (25 bp)
GAATTCCTTCACTACGGTTGTACAT
LOC_Os03g55840
Os.53613.1.S1_at--481--10791Chr03:31727061..31727085 (25 bp)
TTGTTACTGCTACTGGATCATGTCA
LOC_Os03g55840
Os.53613.1.S1_at--399--2291Chr03:31727027..31727051 (25 bp)
AAATGATGATTCACTTTGCTTAGCC
NONE
Target Sequence 
ACATGATCTCCACGCTGTACTGCAAGCTCGGCGCCCGCGGCGACGCGCGGCGAGCACTCGAGGGAGCGTCGAGGCCGCGG
GGGAAGGATCATGAGCAGGAGCAGGAGCACGGCGACGAGGCGAAGAGGCGGGAGGCGTACGAGAAGGTGCGGGAGCTGCA
CGAGGAGATACGCGCGGCGGGGTACGTGCCGGACACCCGCTACGTGCTGCACGACATCGACGAGGACGCCAAGGCCCGCG
CGCTCATGTACCACAGCGAGCGCCTCGCCATCGCGTTCGGGCTGGTCAGCACGCCACCGGGCACCCCGCTCCGCGTCATC
AAGAACCTCCGCATCTGCGGTGACTGCCACAATGCCGTCAAGCTCATCGCCAAGGTCACCGGCCGCGAGATTGTCGTCAG
GGACAACAAGCGCTTCCACCATTTCAAGGACGGCGCCTGCTCCTGCGGCGATTACTGGTGAGGTGAGCCATCTCTCCACC
ACTACTGTCATTGACACCCATTGTTATAGTTGAATTCCTTCACTACGGTTGTACATTGTTACTGCTACTGGATCATGTCA
GTGATGAAGAAATGATGATTCACTTTGCTTAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis