Browse Element(s) Details


Os.5362.1.S1_at

Description gb:AK072915.1
DB_XREF= gi:32982938
TID=Os.5362.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5362 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149O05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149O05, full insert sequence.
FL= gb:AK072915.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2959011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29570Os.17020.1.S1_x_at11/118+17995692..18000215PDR-type ABC transporter 1, putative, expressed
LOC_Os08g29580OsAffx.17228.1.S1_at11/118+18009435..18010342hypothetical protein
LOC_Os08g29590Os.5362.1.S1_at11/118+18023865..18028139Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g29600Os.55263.1.S1_at11/118+18028233..18028755seed maturation protein PM41, putative, expressed
LOC_Os08g29610OsAffx.29420.1.S1_at11/118+18032630..18034006hypothetical protein
LOC_Os08g29630OsAffx.28472.1.S1_x_at11/118+18047792..18047992hypothetical protein
LOC_Os08g29630OsAffx.31730.1.S1_x_at2/118+18047792..18047992hypothetical protein
LOC_Os08g29640OsAffx.29421.1.S1_at8/118+18051761..18052636hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5362.1.S1_at--702--8831Chr08:18027428..18027452 (25 bp)
TGATACTGCATTGTTCGTCCTTCAA
LOC_Os08g29590
Os.5362.1.S1_at--764--8811Chr08:18027453..18027477 (25 bp)
TGATAACCAAGACCCATGCCTAGCT
LOC_Os08g29590
Os.5362.1.S1_at--420--591Chr08:18027468..18027492 (25 bp)
ATGCCTAGCTGGGTGCCGGAACTGC
LOC_Os08g29590
Os.5362.1.S1_at--947--3931Chr08:18027640..18027664 (25 bp)
CGGCATTACCACATCTTGACCAAAA
LOC_Os08g29590
Os.5362.1.S1_at--801--8191Chr08:18027802..18027826 (25 bp)
GGAAGATCTTCATGGCAGCTACACG
LOC_Os08g29590
Os.5362.1.S1_at--1045--5511Chr08:18027862..18027886 (25 bp)
GAAAATGCTGAAGCTCCTCTAGCCT
LOC_Os08g29590
Os.5362.1.S1_at--973--2531Chr08:18027903..18027927 (25 bp)
AACTACTACCGCCTGTATATCTGCT
LOC_Os08g29590
Os.5362.1.S1_at--509--3811Chr08:18027929..18027953 (25 bp)
CTCCTCTTTCGCTTCAGATTAACAA
LOC_Os08g29590
Os.5362.1.S1_at--74--6511Chr08:18028046..18028070 (25 bp)
GATATGTTTACCTTGTCGCGTGAGT
LOC_Os08g29590
Os.5362.1.S1_at--529--8891Chr08:18028066..18028090 (25 bp)
TGAGTGTTCCTCGATCATACTGCTG
LOC_Os08g29590
Os.5362.1.S1_at--132--331Chr08:18028082..18028106 (25 bp)
ATACTGCTGCTGGAACTACACTATG
LOC_Os08g29590
Target Sequence 
TGATACTGCATTGTTCGTCCTTCAATGATAACCAAGACCCATGCCTAGCTGGGTGCCGGAACTGCTGCTATGGTTGGGGC
GTCCTGGACTGCCTGCCTGCTTCTCTGGAGGCCTGCTTTGCCCTGGTGGTGGTTTTCGTTGTCGTGTTCGCCATCCTCGG
TATCGCATACGGTTTCCTCGCGGCAANCTATGGCTGTCCAAAGAATCTGGCAGCGGCATTACCACATCTTGACCAAAAGA
GAACTCACAAAGGAGTACGTGGTGGAAGATCTTCATGGCAGCTACACGCCACCGAAGCTTGATCCAGAGCATGAGGAGCG
GCTGAAAATGCTGAAGCTCCTCTAGCCTCTCATGGCAATTACAGAACTACTACCGCCTGTATATCTGCTCCTCCTCTTTC
GCTTCAGATTAACAAACGGCAATCTGTTGTACACCAGTGTAAATATTGAGTACGTGTGCCGAAACAAAATGTCTCGGGTG
AGTGTTTGNTGTCAATTTAATTCGATCGATATGTTTACCTTGTCGCGTGAGTGTTCCTCGATCATACTGCTGCTGGAACT
ACACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5362.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis