Browse Element(s) Details


Os.55263.1.S1_at

Description gb:AK107755.1
DB_XREF= gi:32992964
TID=Os.55263.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-133-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-133-A03, full insert sequence.
FL= gb:AK107755.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2960011/11seed maturation protein PM41, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29580OsAffx.17228.1.S1_at11/118+18009435..18010342hypothetical protein
LOC_Os08g29590Os.5362.1.S1_at11/118+18023865..18028139Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g29600Os.55263.1.S1_at11/118+18028233..18028755seed maturation protein PM41, putative, expressed
LOC_Os08g29610OsAffx.29420.1.S1_at11/118+18032630..18034006hypothetical protein
LOC_Os08g29630OsAffx.28472.1.S1_x_at11/118+18047792..18047992hypothetical protein
LOC_Os08g29630OsAffx.31730.1.S1_x_at2/118+18047792..18047992hypothetical protein
LOC_Os08g29640OsAffx.29421.1.S1_at8/118+18051761..18052636hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55263.1.S1_at--971--1711Chr08:18028685..18028709 (25 bp)
ACCAGCAATAATGTCCGGCGCGCAA
LOC_Os08g29600
Os.55263.1.S1_at--299--3931Chr08:18028670..18028694 (25 bp)
CGGCGCGCAAGGTGCACAGCCCAAG
LOC_Os08g29600
Os.55263.1.S1_at--51--4711Chr08:18028407..18028431 (25 bp)
GCGGCTGATATTACTGCTGCTTCTT
LOC_Os08g29600
Os.55263.1.S1_at--874--9111Chr08:18028393..18028417 (25 bp)
TGCTGCTTCTTCAGTCACCATGTGC
LOC_Os08g29600
Os.55263.1.S1_at--36--1171Chr08:18028381..18028405 (25 bp)
AGTCACCATGTGCTCCCTTGTAAAA
LOC_Os08g29600
Os.55263.1.S1_at--1054--771Chr08:18028374..18028398 (25 bp)
ATGTGCTCCCTTGTAAAACTGTAGT
LOC_Os08g29600
Os.55263.1.S1_at--648--2391Chr08:18028360..18028384 (25 bp)
AAAACTGTAGTAGCCTCTGTGGGTC
LOC_Os08g29600
Os.55263.1.S1_at--1157--1671Chr08:18028349..18028373 (25 bp)
AGCCTCTGTGGGTCTGTCTGTGTAG
LOC_Os08g29600
Os.55263.1.S1_at--358--7491Chr08:18028342..18028366 (25 bp)
GTGGGTCTGTCTGTGTAGCACACGA
LOC_Os08g29600
Os.55263.1.S1_at--964--7171Chr08:18028334..18028358 (25 bp)
GTCTGTGTAGCACACGAAGTGCAAA
LOC_Os08g29600
Os.55263.1.S1_at--1049--5311Chr08:18028319..18028343 (25 bp)
GAAGTGCAAAGACTTCTTTTCTATA
LOC_Os08g29600
Target Sequence 
ACCAGCAATAATGTCCGGCGCGCAAGGTGCACAGCCCAAGGGCGCCTTCACGGCGACCACGTCAGGTCGGCGGCGGCCGC
GGCCACCGGCGGCGAGGAGGAGAGCCGGCACCCGCCGCCGCCGGCGAGGACGGAGCTCCGGTCGACCGAGGACGAGCGCG
GGCTGCCCGTGAAGAGGCTGGAGGACAAGGTCGACGACGCCGCCGGGAAGGGCGGCCCGGTGTTCGGCGCCGGCGAGGAC
GACGGCAAGCCAGACCTCGGCGTCACCAGCACCGGCGGCGGCTGATATTACTGCTGCTTCTTCAGTCACCATGTGCTCCC
TTGTAAAACTGTAGTAGCCTCTGTGGGTCTGTCTGTGTAGCACACGAAGTGCAAAGACTTCTTTTCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis