Browse Element(s) Details


OsAffx.17228.1.S1_at

Description tigr:9636.m02937
TID=OsAffx.17228.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2958011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29550OsAffx.29419.3.S1_at11/118+17983779..17985502hypothetical protein
LOC_Os08g29550OsAffx.21161.1.S1_at1/118+17983779..17985502hypothetical protein
LOC_Os08g29560Os.51693.1.S1_at11/118+17989347..17994597retrotransposon protein, putative, unclassified
LOC_Os08g29560Os.53737.1.S1_at5/118+17989347..17994597retrotransposon protein, putative, unclassified
LOC_Os08g29570Os.17020.1.S1_x_at11/118+17995692..18000215PDR-type ABC transporter 1, putative, expressed
LOC_Os08g29580OsAffx.17228.1.S1_at11/118+18009435..18010342hypothetical protein
LOC_Os08g29590Os.5362.1.S1_at11/118+18023865..18028139Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g29600Os.55263.1.S1_at11/118+18028233..18028755seed maturation protein PM41, putative, expressed
LOC_Os08g29610OsAffx.29420.1.S1_at11/118+18032630..18034006hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17228.1.S1_at--850--1231Chr08:18010244..18010268 (25 bp)
AGTTGCGTGCCCTGACGCGGTACCG
LOC_Os08g29580
OsAffx.17228.1.S1_at--624--4691Chr08:18010196..18010220 (25 bp)
GCGGCAACAGCAGATGGTGAGCACA
LOC_Os08g29580
OsAffx.17228.1.S1_at--816--1311Chr08:18010185..18010209 (25 bp)
AGATGGTGAGCACATGCTCCCCTGG
LOC_Os08g29580
OsAffx.17228.1.S1_at--822--8531Chr08:18010144..18010168 (25 bp)
TGGACCATGGCAGTTGTCCGTGGTT
LOC_Os08g29580
OsAffx.17228.1.S1_at--217--1251Chr08:18010133..18010157 (25 bp)
AGTTGTCCGTGGTTGCCTTGATCCG
LOC_Os08g29580
OsAffx.17228.1.S1_at--461--4251Chr08:18010127..18010151 (25 bp)
CCGTGGTTGCCTTGATCCGGTGACG
LOC_Os08g29580
OsAffx.17228.1.S1_at--904--1451Chr08:18010089..18010113 (25 bp)
AGAAGGCTCATGCAGAGGGCGCGGT
LOC_Os08g29580
OsAffx.17228.1.S1_at--12--5591Chr08:18009525..18009549 (25 bp)
GAAATGGCAGTCGAAATCCTTGAAT
LOC_Os08g29580
OsAffx.17228.1.S1_at--202--3031Chr08:18009511..18009535 (25 bp)
AATCCTTGAATAAACCCATGCCTCT
LOC_Os08g29580
OsAffx.17228.1.S1_at--513--3771Chr08:18009490..18009514 (25 bp)
CTCTCTCCCACTTGTTTTTTGATTT
LOC_Os08g29580
OsAffx.17228.1.S1_at--941--4351Chr08:18009483..18009507 (25 bp)
CCACTTGTTTTTTGATTTCTTCCAT
LOC_Os08g29580
Target Sequence 
AGTTGCGTGCCCTGACGCGGTACCGTCCCAGCGGTGGTGCAGGCTGGGGCGGCAACAGCAGATGGTGAGCACATGCTCCC
CTGGGGCCCGAGCCGTGGCGTGGACCATGGCAGTTGTCCGTGGTTGCCTTGATCCGGTGACGGTGGCGGTGGTGGAGAAG
GCTCATGCAGAGGGCGCGGTGGCAGCCGACGGTCGGGAAGTGGTAGAGGAGAAATGGCAGTCGAAATCCTTGAATAAACC
CATGCCTCTCTCCCACTTGTTTTTTGATTTCTTCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis