Browse Element(s) Details


Os.53653.1.S2_at

Description gb:AK073759.1
DB_XREF= gi:32983782
TID=Os.53653.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53653 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033065D18, full insert sequence.
FL= gb:AK108692.1 gb:AK073759.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4621011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46160Os.14491.2.S1_x_at1/1111+27452319..27454529transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46160Os.47463.1.S1_x_at1/1111+27452319..27454529transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46170NANA11+27457406..27458972transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46180NANA11+27462960..27463325transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46190NANA11+27464722..27468027transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g46200OsAffx.31507.1.S1_at11/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46200Os.52514.1.S1_x_at8/1111+27471560..27476789Leucine Rich Repeat family protein
LOC_Os11g46210Os.53653.1.S1_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46210Os.53653.1.S2_at11/1111+27477889..27482321NB-ARC domain containing protein, expressed
LOC_Os11g46220OsAffx.19403.1.S1_s_at11/1111+27483708..27484457hypothetical protein
LOC_Os11g46230Os.28482.1.S1_at11/1111+27484924..27490262calmodulin-binding protein MPCBP, putative, expressed
LOC_Os11g46240NANA11+27491557..27498315retrotransposon protein, putative, unclassified, expressed
LOC_Os11g46250Os.38403.1.S1_s_at11/1111+27498803..27506962expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53653.1.S2_at--1039--7031Chr11:27481731..27481755 (25 bp)
GTAAAGGGCATCCTTGAGGACAATA
LOC_Os11g46210
Os.53653.1.S2_at--427--8151Chr11:27481748..27481772 (25 bp)
GGACAATAAATTGGCCACTGACGGG
LOC_Os11g46210
Os.53653.1.S2_at--973--4391Chr11:27481838..27481862 (25 bp)
GCCAAAGCTCAGCTTTCCGGACAAG
LOC_Os11g46210
Os.53653.1.S2_at--1097--10271Chr11:27481851..27481875 (25 bp)
TTTCCGGACAAGAGTGCAATGCCAG
LOC_Os11g46210
Os.53653.1.S2_at--956--3111Chr11:27481906..27481930 (25 bp)
AATTTGAGGGTCTATTCGGCATCGA
LOC_Os11g46210
Os.53653.1.S2_at--210--5491Chr11:27482091..27482115 (25 bp)
GAACTTGCCAATCATCTGATGCTGC
LOC_Os11g46210
Os.53653.1.S2_at--1044--8851Chr11:27482107..27482131 (25 bp)
TGATGCTGCCCCTCTATCATTACTC
LOC_Os11g46210
Os.53653.1.S2_at--841--231Chr11:27482171..27482195 (25 bp)
ATATTTCTGTTATTACTCTCCTGGC
LOC_Os11g46210
Os.53653.1.S2_at--34--9471Chr11:27482176..27482200 (25 bp)
TCTGTTATTACTCTCCTGGCTAAAT
LOC_Os11g46210
Os.53653.1.S2_at--339--5231Chr11:27482217..27482241 (25 bp)
GAATATATGTTACCTCTTACCATGG
LOC_Os11g46210
Os.53653.1.S2_at--663--6751Chr11:27482225..27482249 (25 bp)
GTTACCTCTTACCATGGTCCCGTAG
LOC_Os11g46210
Target Sequence 
GTAAAGGGCATCCTTGAGGACAATAAATTGGCCACTGACGGGGAAATCGTCATTCCAGCTAAAGAATTCAAGAGTCTTAA
GCTGCTTCGCTTCTTTGCACCTTTCGTGCCAAAGCTCAGCTTTCCGGACAAGAGTGCAATGCCAGCACTCGAAATCATTG
AAATGCGGTTTCAAGAATTTGAGGGTCTATTCGGCATCGAAATCCTTGAAAATCTCCGTGAGGTGCATCTCANAGTTAGC
GATGGGGCAGAAGCAATAACCAAGTTCCTAGTAAGTGATTTGAAGGATAATACTGAGAAACCAAAAGTATTTGTTGATGG
CATCGTCACTGCATGAGAAGTTAAATTGTTGCAAATAGGAGAACTTGCCAATCATCTGATGCTGCCCCTCTATCATTACT
CTCTTCTAATATATTTCTGTTTTTTTTTTGAAAGGATAATATATTTCTGTTATTACTCTCCTGGCTAAATAANATAGGAT
GGCATGGAATATATGTTACCTCTTACCATGGTCCCGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53653.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis