Browse Element(s) Details


Os.53677.1.S1_at

Description gb:AK073871.1
DB_XREF= gi:32983894
TID=Os.53677.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53677 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033075F07, full insert sequence.
FL= gb:AK073871.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5858011/11phosphomannomutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g58520OsAffx.26656.1.S1_x_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58520OsAffx.26656.1.S1_at11/114+34585218..34585811hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58530OsAffx.26656.1.S1_x_at11/114+34587860..34588719hypothetical protein
LOC_Os04g58540NANA4+34588896..34590045transposon protein, putative, Mariner sub-class
LOC_Os04g58550Os.14302.1.S1_s_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58550Os.35349.1.S1_at11/114+34591519..34594443membrane acyl-CoA binding protein, putative, expressed
LOC_Os04g58560Os.49464.1.S1_at11/114+34597600..34601021Peptidase family C54 containing protein, expressed
LOC_Os04g58570Os.26458.1.A1_at11/114+34605414..34607241C2 domain protein At1g63220, putative, expressed
LOC_Os04g58580Os.53677.1.S1_at11/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58580Os.8518.1.S1_x_at6/114+34609185..34612135phosphomannomutase, putative, expressed
LOC_Os04g58590Os.53405.1.S1_at11/114+34612987..34618277RNA recognition motif family protein, expressed
LOC_Os04g58600Os.18048.1.S1_at11/114+34620431..34624271Asparaginase family protein, expressed
LOC_Os04g58610Os.51336.1.S1_at11/114+34633903..34635823retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019307biological_processmannose biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0004615molecular_functionphosphomannomutase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53677.1.S1_at--890--911Chr04:34611529..34611553 (25 bp)
AGGCTATTCCAATCAAGCAATACTG
LOC_Os04g58580
Os.53677.1.S1_at--601--331Chr04:34611587..34611611 (25 bp)
ATACTTGCTGGCAGTTTCCATCATT
LOC_Os04g58580
Os.53677.1.S1_at--735--5531Chr04:34611657..34611681 (25 bp)
GAAACAACCACAAACACTTGGGTCA
LOC_Os04g58580
Os.53677.1.S1_at--683--3091Chr04:34611720..34611744 (25 bp)
AATACTTCACAAGTTCCATTATGGT
LOC_Os04g58580
Os.53677.1.S1_at--713--7911Chr04:34611742..34611766 (25 bp)
GGTTGAGCTGTATCCTCTTACTAAA
LOC_Os04g58580
Os.53677.1.S1_at--341--8211Chr04:34611769..34611793 (25 bp)
GGAATACTCTTGCAAGCTTCTCATA
LOC_Os04g58580
Os.53677.1.S1_at--468--4911Chr04:34611784..34611808 (25 bp)
GCTTCTCATATGTGGCTGAGTCTTG
LOC_Os04g58580
Os.53677.1.S1_at--1108--3831Chr04:34611799..34611823 (25 bp)
CTGAGTCTTGTTTGCCGAGGTTAAA
LOC_Os04g58580
Os.53677.1.S1_at--434--2391Chr04:34611821..34611845 (25 bp)
AAACTTGCTTTAAATCTTTTCTGAG
LOC_Os04g58580
Os.53677.1.S1_at--376--731Chr04:34611853..34611877 (25 bp)
ATGATTGATGCCATCACCAAGCTGA
LOC_Os04g58580
Os.53677.1.S1_at--729--10351Chr04:34611886..34611910 (25 bp)
TTTATATTTGCAGTTACCAGTCCTG
LOC_Os04g58580
Target Sequence 
AGGCTATTCCAATCAAGCAATACTGCACAGATCATGCAAATGAATGTTCAGTAGCAGTATACTTGCTGGCAGTTTCCATC
ATTAGAATTGACCAATTCAGGTTAATGTTCATGAATAAAATTCAGTTTGAAACAACCACAAACACTTGGGTCAAGTCTTG
AATAAACAAAGCAATAACATTTTCTTCTGGAAATACTTCACAAGTTCCATTATGGTTGAGCTGTATCCTCTTACTAAATA
GGAATACTCTTGCAAGCTTCTCATATGTGGCTGAGTCTTGTTTGCCGAGGTTAAACTTGCTTTAAATCTTTTCTGAGCTA
ATACATGATTGATGCCATCACCAAGCTGATTTCATCATTTATATTTGCAGTTACCAGTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53677.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis