Browse Element(s) Details


Os.53698.1.S1_at

Description gb:AK074002.1
DB_XREF= gi:32984025
TID=Os.53698.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53698 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076B20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076B20, full insert sequence.
FL= gb:AK074002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g434208/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43390Os.49941.1.S1_at11/1111+25688350..25691231expressed protein
LOC_Os11g43400Os.20602.2.S1_x_at9/1111+25693857..25695935hAT family dimerisation domain containing protein
LOC_Os11g43404Os.32717.1.S1_at11/1111+25696774..25699226expressed protein
LOC_Os11g43404Os.51236.1.S1_x_at1/1111+25696774..25699226expressed protein
LOC_Os11g43410OsAffx.19352.1.S1_at11/1111+25706256..25708996NB-ARC domain containing protein, expressed
LOC_Os11g43420Os.53698.1.S1_at8/1111+25710912..25713973NB-ARC domain containing protein, expressed
LOC_Os11g43430Os.14491.2.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43430Os.47463.1.S1_x_at1/1111+25718811..25723864transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43440NANA11+25727431..25728051hypothetical protein
LOC_Os11g43450NANA11+25729552..25732285transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g43460OsAffx.447.1.S1_at7/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460Os.52609.1.S1_at2/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43460OsAffx.22947.2.S1_x_at1/1111+25735696..25740238retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53698.1.S1_at--145--5991Chr11:25713591..25713615 (25 bp)
GAGACTTCACTCACGGAACATGTTC
LOC_Os11g43420
Os.53698.1.S1_at--1127--2491Chr11:25713607..25713631 (25 bp)
AACATGTTCTCGGTATCCTGGGACA
LOC_Os11g43420
Os.53698.1.S1_at--825--3231Chr11:25713653..25713677 (25 bp)
CAAGCTCCAGTGCAATTCAACCATG
LOC_Os11g43420
Os.53698.1.S1_at--494--7851Chr11:25713678..25713702 (25 bp)
GGTAGCAGTCTATCGTTCAGGAGTG
LOC_Os11g43420
Os.53698.1.S1_at--523--6111Chr11:25713698..25713722 (25 bp)
GAGTGGAGCGTTTCGGAACCTCGTA
LOC_Os11g43420
Os.53698.1.S1_at--823--9391Chr11:25713718..25713742 (25 bp)
TCGTAGCTCTTGTTGTCCAGGACAA
LOC_Os11g43420
Os.53698.1.S1_at--324--10431Chr11:25713757..25713781 (25 bp)
TTATCTTTGATTACGGAGCAGCTCC
LOC_Os11g43420
Os.53698.1.S1_at--64--6031Chr11:25713791..25713815 (25 bp)
GAGAGTGATATTGTCTATCGCCGCC
LOC_Os11g43420
Os.53698.1.S1_at--968--9471NONE
TCTGAATGTCTGGTGCTTGCATCTG
NONE
Os.53698.1.S1_at--867--5131NONE
GCAAACCTCTTTTTTCTTGATGCAT
NONE
Os.53698.1.S1_at--706--10411NONE
TTATATGTATCCTCCACAGTTGCCA
NONE
Target Sequence 
GAGACTTCACTCACGGAACATGTTCTCGGTATCCTGGGACAGCTTGGCAGCCTGCGGTGCCTCAAGCTCCAGTGCAATTC
AACCATGGGTAGCAGTCTATCGTTCAGGAGTGGAGCGTTTCGGAACCTCGTAGCTCTTGTTGTCCAGGACAATAACCTCC
TTGACATTATCTTTGATTACGGAGCAGCTCCAAGGCTTGAGAGAGTGATATTGTCTATCGCCGCCATTGACTCTCTGTCT
GGAGTACAGCACCTTCAGCAGCTGAAAGAGCTCGAGCTCCATGGAAGTGCAAGAAACATAGGCGAGGTCGAACAGGCCAT
AGCAGGACACCATAATAATCCAGTTTTCAGACACGAGCAATGGAATGATCTTCACTGAAGCTTCCGAAATTCTGAATGTC
TGGTGCTTGCATCTGTGTTCTACAATGAAGATAGTAATAAGTGGACGCAAAGCAAACCTCTTTTTTCTTGATGCATCCAT
GTTAAATTTTACTTGTGTTGGATTTTCAGTTTGTTTGATTTATATGTATCCTCCACAGTTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53698.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis