Browse Element(s) Details


Os.53721.1.S1_at

Description gb:AK099491.1
DB_XREF= gi:32984700
TID=Os.53721.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.53721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026N15, full insert sequence.
FL= gb:AK099491.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3083011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g30770OsAffx.25307.1.S1_at11/113+17502979..17503386hypothetical protein
LOC_Os03g30780OsAffx.13135.1.S1_at7/113+17503853..17504585expressed protein
LOC_Os03g30790Os.52080.1.S1_at11/113+17505881..17511210SPFH domain protein 2 precursor, putative, expressed
LOC_Os03g30800OsAffx.3375.1.S1_at9/113+17513606..17516003fumarylacetoacetate hydrolase family protein
LOC_Os03g30810NANA3+17516764..17520999retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30820NANA3+17522143..17522370NA
LOC_Os03g30830Os.53721.1.S1_at11/113+17524643..17527080expressed protein
LOC_Os03g30840Os.31503.1.S1_at11/113+17531188..17532026expressed protein
LOC_Os03g30840Os.31503.1.S1_x_at11/113+17531188..17532026expressed protein
LOC_Os03g30850OsAffx.13136.1.S1_at11/113+17536053..17536358hypothetical protein
LOC_Os03g30860NANA3+17538285..17542598retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g30870OsAffx.25308.1.S1_at11/113+17543105..17544111progesterone 5-beta-reductase, putative

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53721.1.S1_at--493--1131Chr03:17525187..17525211 (25 bp)
AGTGCTGCTGGGACAACTGGCTTGA
LOC_Os03g30830
Os.53721.1.S1_at--728--6211Chr03:17525123..17525147 (25 bp)
GAGGCGGCATCGGAACCGGCACCAA
LOC_Os03g30830
Os.53721.1.S1_at--206--91Chr03:17524966..17524990 (25 bp)
ATTGCCATGAAGTGATCTCTCTCTC
LOC_Os03g30830
Os.53721.1.S1_at--474--3331Chr03:17524942..17524966 (25 bp)
CACTCTCCCTGTGATGGTAGAAGAA
LOC_Os03g30830
Os.53721.1.S1_at--379--6951Chr03:17524910..17524934 (25 bp)
GTAGATCAAACTCCTCTTTGTATTT
LOC_Os03g30830
Os.53721.1.S1_at--713--6871Chr03:17524873..17524897 (25 bp)
GTATAGTTGATGTCTGATCTACCAA
LOC_Os03g30830
Os.53721.1.S1_at--469--5231Chr03:17524804..17524828 (25 bp)
GAATCCAAATTGATCCATCTGCCCA
LOC_Os03g30830
Os.53721.1.S1_at--483--471Chr03:17524788..17524812 (25 bp)
ATCTGCCCACTAGCACTAGGGATTG
LOC_Os03g30830
Os.53721.1.S1_at--1061--4731Chr03:17524754..17524778 (25 bp)
GCTGTTCTTGTTGCTTAGTGTTGTG
LOC_Os03g30830
Os.53721.1.S1_at--764--10431Chr03:17524679..17524703 (25 bp)
TTATGGCTCATACTGCAGGCTGCTG
LOC_Os03g30830
Os.53721.1.S1_at--1010--6851Chr03:17524645..17524669 (25 bp)
GTTTGGTAGGATGTCTATCTCTTTC
LOC_Os03g30830
Target Sequence 
AGTGCTGCTGGGACAACTGGCTTGAGCCCTGGAGTCGGCACCGGCACCGGCACCTTGAGCCCCGGAGGCGGCATCGGAAC
CGGCACCAATGGCACCGGGATGGGGAGCGCCCTGAGCCCGCCGGGCACGAGCAACTTCGACGGCNNNNNNNNGGAGGCCG
GCTTGCTCCCGAGGGCTGAGCCGGCCATCTTCTTCACCGTCCTCCTCCTCTCGTTCTTGGCATTGCCATGAAGTGATCTC
TCTCTCACTCTCCCTGTGATGGTAGAAGAAAGCAGCAGTAGATCAAACTCCTCTTTGTATTTTACTATTTTTCAGTATAG
TTGATGTCTGATCTACCAAAAGGGAAAAAAATATATGAAAAGTTTGATTGGTTGGAGAGAAGAGAATCCAAATTGATCCA
TCTGCCCACTAGCACTAGGGATTGCTGCTAGCTGCTGTTCTTGTTGCTTAGTGTTGTGATGGTGTGAGAGTATAACTTTT
TGGTTGAAGTATACTATACTATACCTTTTTATGGCTCATACTGCAGGCTGCTGGTGCATATGGTTTGGTAGGATGTCTAT
CTCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis