Browse Element(s) Details


Os.53736.1.S1_at

Description gb:AK099627.1
DB_XREF= gi:32984836
TID=Os.53736.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53736 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055M04, full insert sequence.
FL= gb:AK099627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4470011/11WD-40 repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44690OsAffx.4088.1.S1_at10/114+26248453..26248979hypothetical protein
LOC_Os04g44700Os.53736.1.S1_at11/114+26256387..26261046WD-40 repeat family protein, putative, expressed
LOC_Os04g44710Os.49303.1.S1_a_at11/114+26265032..26275498C-terminal domain phosphatase-like 1, putative, expressed
LOC_Os04g44730OsAffx.4090.1.S1_s_at11/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44730Os.10728.1.S1_at1/114+26279872..26284112Lanthionine synthetase C-like protein, expressed
LOC_Os04g44740Os.7583.1.S1_x_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed
LOC_Os04g44740OsAffx.4091.1.S1_at11/114+26285142..26288130Alpha 1,4-glycosyltransferase conserved region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53736.1.S1_at--935--3451Chr04:26260381..26260489 (25 bp)
CAGGGTTTCAGTTTCTCCCAGGAAG
LOC_Os04g44700
Os.53736.1.S1_at--95--5351Chr04:26260486..26260510 (25 bp)
GAAGTTCTTCAAAGGTGCTCATCAC
LOC_Os04g44700
Os.53736.1.S1_at--1052--6791Chr04:26260577..26260601 (25 bp)
GTTTTGTGCCTTGGAACTTATTCAT
LOC_Os04g44700
Os.53736.1.S1_at--712--7871Chr04:26260622..26260646 (25 bp)
GGTTTAGTATCCTTTTTCTCAGATA
LOC_Os04g44700
Os.53736.1.S1_at--281--1991Chr04:26260654..26260678 (25 bp)
ACTCCTGAATGTTACTTACCTGCTT
LOC_Os04g44700
Os.53736.1.S1_at--681--10451Chr04:26260669..26260693 (25 bp)
TTACCTGCTTCTTTTCGGTTGTACT
LOC_Os04g44700
Os.53736.1.S1_at--275--7031Chr04:26260696..26260720 (25 bp)
GTACAGTCCCAGTCAAACTTCTTAT
LOC_Os04g44700
Os.53736.1.S1_at--1120--511Chr04:26260723..26260747 (25 bp)
ATCCATAAACCACCTTTGTTACTTG
LOC_Os04g44700
Os.53736.1.S1_at--486--3091Chr04:26260868..26260892 (25 bp)
AATACTGCAATTCCCTGCTCATTGA
LOC_Os04g44700
Os.53736.1.S1_at--456--10591Chr04:26260926..26260950 (25 bp)
TTCTCCTGTCGTTTTCTTTCAACAA
LOC_Os04g44700
Os.53736.1.S1_at--553--7111Chr04:26260963..26260987 (25 bp)
GTCAGAATCCACTTTGTTGAGGCAA
LOC_Os04g44700
Target Sequence 
CAGGGTTTCAGTTTCTCCCAGGAAGTTCTTCAAAGGTGCTCATCACATCTGCAGATTCACGAATACGAGTTGTTGATGGT
TTTGAACTAGTTCATAAATTCAAAGGTATTAAGTTTTGTGCCTTGGAACTTATTCATATCAGATTGTTTTTGTTCAAGGT
TTAGTATCCTTTTTCTCAGATATACAAATACTCCTGAATGTTACTTACCTGCTTCTTTTCGGTTGTACTAAGTACAGTCC
CAGTCAAACTTCTTATTCATCCATAAACCACCTTTGTTACTTGTTACTTTTACCACTCCTTTTTTTGTTGCAGTGTTGCA
CTGGAATCCAGGTGTATAGAGTTATGCTAGGAAGTCATAATAGGTCTGCAGTAACCAAATCATGCTGTGATCATCAGATC
ACAAATACTGCAATTCCCTGCTCATTGATTAAAATTTTGAACGTGACTAGTTAAAACTAGTTTCTCCTGTCGTTTTCTTT
CAACAAAGTGCCAAAACTGTCAGAATCCACTTTGTTGAGGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53736.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis