Browse Element(s) Details


Os.53737.1.S1_at

Description gb:AK099638.1
DB_XREF= gi:32984847
TID=Os.53737.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53737 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059N04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059N04, full insert sequence.
FL= gb:AK099638.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0531011/11retrotransposon protein, putative, unclassified, expressed
LOC_Os08g295605/11retrotransposon protein, putative, unclassified
LOC_Os02g062304/11retrotransposon protein, putative, unclassified
LOC_Os07g413802/11retrotransposon protein, putative, unclassified
LOC_Os11g356301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05270OsAffx.31592.1.S1_at11/1112+2345444..2346277Zinc finger, C3HC4 type family protein
LOC_Os12g05280OsAffx.31592.1.S1_at11/1112+2349648..2350376hypothetical protein
LOC_Os12g05290NANA12+2353230..2357996retrotransposon protein, putative, unclassified
LOC_Os12g05310Os.53737.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed
LOC_Os12g05310Os.51693.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed
LOC_Os12g05320Os.56249.1.A1_at11/1112+2388855..2394275expressed protein
LOC_Os12g05330Os.27230.1.A1_at11/1112+2394804..2396717expressed protein
LOC_Os12g05340OsAffx.31593.1.S1_at11/1112+2406163..2406522hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53737.1.S1_at--516--8091Chr12:2374677..2374701 (25 bp)
GGACCAACCATAGCCTGGAGCATGA
LOC_Os12g05310
Os.53737.1.S1_at--313--711Chr12:2374602..2374626 (25 bp)
ATGAGGAGCTCGTCACTGGCTGCCA
LOC_Os12g05310
Os.53737.1.S1_at--216--7931Chr12:2374563..2374587 (25 bp)
GGATTGACCACAACCTGGAGTTCTT
LOC_Os12g05310
Os.53737.1.S1_at--397--8551Chr12:2374548..2374572 (25 bp)
TGGAGTTCTTGATTGACCGGATGAT
LOC_Os12g05310
Os.53737.1.S1_at--453--6291Chr12:2374529..2374553 (25 bp)
GATGATGTCCTGGTCAGTGCGAGAC
LOC_Os12g05310
Os.53737.1.S1_at--171--5991Chr12:2374509..2374533 (25 bp)
GAGACATCTTGAAGGCGCCACCTGT
LOC_Os12g05310
Os.53737.1.S1_at--959--2733Chr08:17991562..17991586 (25 bp)
AAGAAACTTGGGACTGGCGTCAGGC
LOC_Os08g29560
Os.53737.1.S1_at--1038--757Chr08:17991633..17991657 (25 bp)
ATGTCTTGCATTGATGGCTTCTACA
LOC_Os08g29560
Os.53737.1.S1_at--253--6196Chr08:17991824..17991848 (25 bp)
GAGGACTCCGAAGTATGTTACCATT
LOC_Os08g29560
Os.53737.1.S1_at--105--3156Chr08:17991855..17991879 (25 bp)
AATTCACTCAGATGTTTGGACTTCA
LOC_Os08g29560
Os.53737.1.S1_at--244--10514Chr08:17991876..17991900 (25 bp)
TTCACCTATGGTCTCTATGAGTGGA
LOC_Os08g29560
Target Sequence 
GGACCAACCATAGCCTGGAGCATGAGGTTTGTGGGGGCGGGAACAACAGTGACAATTTGGGTGGGGATGGCTGTGATGAG
GAGCTCGTCACTGGCTGCCATCACCGGCATGGCAGGATTGACCACAACCTGGAGTTCTTGATTGACCGGATGATGTCCTG
GTCAGTGCGAGACATCTTGAAGGCGCCACCTGTGATAAAGAAGGAGAGGCAAACAGGGAAGAAACTTGGGACTGGCGTCA
GGCGTGATGGACTTTGGTATTTGGATCGAAAGGAGACAAGTGAAGATGTATGTCTTGCATTGATGGCTTCTACAAGTAAA
GAAGAGGCTAAGGTATTACTTTTGCATTGTCGATTGGGGCATATATCTTTTGAAACTATGAGTAAGATGTTTCCAGCAGA
ACTAAGTAGAGTGGATAAACATAAGTTAGTATGTGATGCATGTGAGTATGGAAAACATACAAGAACATCATATGTGAGTA
GAGGACTCCGAAGTATGTTACCATTTATGCTAATTCACTCAGATGTTTGGACTTCACCTATGGTCTCTATGAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53737.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis