Browse Element(s) Details


OsAffx.31592.1.S1_at

Description tigr:9640.m00445
TID=OsAffx.31592.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0527011/11Zinc finger, C3HC4 type family protein
LOC_Os12g0528011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed
LOC_Os12g05240Os.14491.2.S1_x_at3/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05240Os.47463.1.S1_x_at2/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05250OsAffx.19504.1.S1_at11/1112+2333466..2333743hypothetical protein
LOC_Os12g05260Os.2218.1.S1_at11/1112+2337073..2338158Phytosulfokines 5 precursor, putative, expressed
LOC_Os12g05270OsAffx.31592.1.S1_at11/1112+2345444..2346277Zinc finger, C3HC4 type family protein
LOC_Os12g05280OsAffx.31592.1.S1_at11/1112+2349648..2350376hypothetical protein
LOC_Os12g05290NANA12+2353230..2357996retrotransposon protein, putative, unclassified
LOC_Os12g05310Os.53737.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed
LOC_Os12g05310Os.51693.1.S1_at11/1112+2365316..2381942retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31592.1.S1_at--13--1872Chr12:2349904..2349928 (25 bp)
ACGACGGATCGCCATTATTGGATCA
LOC_Os12g05280
OsAffx.31592.1.S1_at--201--8572Chr12:2349922..2349946 (25 bp)
TGGATCAAGTTCTGTGCTACCTTCT
LOC_Os12g05280
OsAffx.31592.1.S1_at--755--9972Chr12:2349939..2349963 (25 bp)
TACCTTCTCCTGAACGGCATCATCA
LOC_Os12g05280
OsAffx.31592.1.S1_at--1089--1352Chr12:2349972..2349996 (25 bp)
AGAGCCTTGCAGATACTCCAAAACG
LOC_Os12g05280
OsAffx.31592.1.S1_at--651--2412Chr12:2349991..2350015 (25 bp)
AAAACGCAAACATGCCGCTCGACCT
LOC_Os12g05280
OsAffx.31592.1.S1_at--372--872Chr12:2350033..2350057 (25 bp)
ATGGCGGCGCAAACATGCCGCTCGA
LOC_Os12g05280
OsAffx.31592.1.S1_at--127--4492Chr12:2350110..2350134 (25 bp)
GCCGGCCTGGAGAAACAGGTGTTTC
LOC_Os12g05280
OsAffx.31592.1.S1_at--1123--2472Chr12:2350123..2350147 (25 bp)
AACAGGTGTTTCATCAGTTTGATCA
LOC_Os12g05280
OsAffx.31592.1.S1_at--47--9612Chr12:2350133..2350157 (25 bp)
TCATCAGTTTGATCACCACGGCGGC
LOC_Os12g05280
OsAffx.31592.1.S1_at--141--312Chr12:2350186..2350210 (25 bp)
ATAGCGCTGCAGGATGCGTCATCTG
LOC_Os12g05280
OsAffx.31592.1.S1_at--1055--7272Chr12:2350253..2350277 (25 bp)
GTGCGCCGGGAACCATAGCTTCCAC
LOC_Os12g05280
Target Sequence 
ACGACGGATCGCCATTATTGGATCAAGTTCTGTGCTACCTTCTCCTGAACGGCATCATCAGCGGCGAGAGAGCCTTGCAG
ATACTCCAAAACGCAAACATGCCGCTCGACCTCGACCTCGACNNNNNNGATGGCGGCGCAAACATGCCGCTCGACCTCGA
CGACGGCGGCGGCTTCCGGGGNGTCCCAGCGTCCGCCGCCGCCGTGGCCGGCCTGGAGAAACAGGTGTTTCATCAGTTTG
ATCACCACGGCGGCGACGACGACGACGACGACGAGGCGAAGGATAGCGCTGCAGGATGCGTCATCTGCATGGAGGAGTTC
GTCGCCGGCGACGAGGTGTGCGCGATACCGTGCGCCGGGAACCATAGCTTCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis