Browse Element(s) Details


OsAffx.19504.1.S1_at

Description tigr:9640.m00443
TID=OsAffx.19504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0525011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed
LOC_Os12g05240Os.14491.2.S1_x_at3/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05240Os.47463.1.S1_x_at2/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05250OsAffx.19504.1.S1_at11/1112+2333466..2333743hypothetical protein
LOC_Os12g05260Os.2218.1.S1_at11/1112+2337073..2338158Phytosulfokines 5 precursor, putative, expressed
LOC_Os12g05270OsAffx.31592.1.S1_at11/1112+2345444..2346277Zinc finger, C3HC4 type family protein
LOC_Os12g05280OsAffx.31592.1.S1_at11/1112+2349648..2350376hypothetical protein
LOC_Os12g05290NANA12+2353230..2357996retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19504.1.S1_at--794--4591Chr12:2333509..2333533 (25 bp)
GCGAAGGCATGGATCTAGGCAAGCC
LOC_Os12g05250
OsAffx.19504.1.S1_at--504--931Chr12:2333513..2333537 (25 bp)
AGGCATGGATCTAGGCAAGCCAGCA
LOC_Os12g05250
OsAffx.19504.1.S1_at--1--831Chr12:2333517..2333541 (25 bp)
ATGGATCTAGGCAAGCCAGCAACAA
LOC_Os12g05250
OsAffx.19504.1.S1_at--119--7591Chr12:2333558..2333582 (25 bp)
GGGCTCGGAGTTGGAGATGAGATCT
LOC_Os12g05250
OsAffx.19504.1.S1_at--234--6311Chr12:2333573..2333698 (25 bp)
GATGAGATCTAAGCGAGCATCCTTC
LOC_Os12g05250
OsAffx.19504.1.S1_at--179--6031Chr12:2333576..2333701 (25 bp)
GAGATCTAAGCGAGCATCCTTCAGC
LOC_Os12g05250
OsAffx.19504.1.S1_at--1045--6411Chr12:2333578..2333703 (25 bp)
GATCTAAGCGAGCATCCTTCAGCAT
LOC_Os12g05250
OsAffx.19504.1.S1_at--694--9531Chr12:2333580..2333705 (25 bp)
TCTAAGCGAGCATCCTTCAGCATAG
LOC_Os12g05250
OsAffx.19504.1.S1_at--1003--9791Chr12:2333582..2333707 (25 bp)
TAAGCGAGCATCCTTCAGCATAGAT
LOC_Os12g05250
OsAffx.19504.1.S1_at--385--4611Chr12:2333690..2333710 (21 bp)
GCGAGCATCCTTCAGCATAGATCGG
LOC_Os12g05250
OsAffx.19504.1.S1_at--794--1531Chr12:2333690..2333713 (24 bp)
AGCATCCTTCAGCATAGATCGGAGC
LOC_Os12g05250
Target Sequence 
GCGAAGGCATGGATCTAGGCAAGCCAGCAACAAGGAGGCGGAGTGTCAGGGGCTCGGAGTTGGAGATGAGATCTAAGCGA
GCATCCTTCAGCATAGATCGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis