Browse Element(s) Details


OsAffx.31589.1.S1_at

Description tigr:9640.m00437
TID=OsAffx.31589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0520011/11DNA-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05160OsAffx.19503.1.S1_at11/1112+2280167..2281290Transposable element protein, putative, RnaseH
LOC_Os12g05170NANA12+2285745..2286920expressed protein
LOC_Os12g05180Os.20300.1.S1_at11/1112+2287583..2289545expressed protein
LOC_Os12g05190OsAffx.7487.1.S1_at11/1112+2299628..2300793hypothetical protein
LOC_Os12g05190OsAffx.23706.1.S1_at2/1112+2299628..2300793hypothetical protein
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed
LOC_Os12g05240Os.14491.2.S1_x_at3/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05240Os.47463.1.S1_x_at2/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05250OsAffx.19504.1.S1_at11/1112+2333466..2333743hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31589.1.S1_at--19--5451Chr12:2307829..2307853 (25 bp)
GAACCGGCGGGCTCAGTGTCTCGCT
LOC_Os12g05200
OsAffx.31589.1.S1_at--191--3931Chr12:2307833..2307857 (25 bp)
CGGCGGGCTCAGTGTCTCGCTTGCC
LOC_Os12g05200
OsAffx.31589.1.S1_at--340--6231Chr12:2307864..2307888 (25 bp)
GATGGCCGTGTTGTCGGCGGTGTAG
LOC_Os12g05200
OsAffx.31589.1.S1_at--861--5911Chr12:2308133..2308157 (25 bp)
GAGCTTCTTGCCCAACAACCTGAAG
LOC_Os12g05200
OsAffx.31589.1.S1_at--968--10691Chr12:2308140..2308164 (25 bp)
TTGCCCAACAACCTGAAGCAGCATC
LOC_Os12g05200
OsAffx.31589.1.S1_at--1065--2451Chr12:2308146..2308170 (25 bp)
AACAACCTGAAGCAGCATCAGAGAA
LOC_Os12g05200
OsAffx.31589.1.S1_at--140--391Chr12:2308162..2308186 (25 bp)
ATCAGAGAAGAATGGGCCTACATCC
LOC_Os12g05200
OsAffx.31589.1.S1_at--621--2212Chr12:2308187..2308211 (25 bp)
ACAACCATCTGCTGCTCCGGCATTT
LOC_Os12g05200
OsAffx.31589.1.S1_at--300--9111Chr12:2308199..2308223 (25 bp)
TGCTCCGGCATTTCCAGCACCGATG
LOC_Os12g05200
OsAffx.31589.1.S1_at--357--8291Chr12:2308205..2308229 (25 bp)
GGCATTTCCAGCACCGATGGCTCCT
LOC_Os12g05200
OsAffx.31589.1.S1_at--744--8691Chr12:2308244..2308268 (25 bp)
TGTGCTCACAGCTGCGATGCCCATT
LOC_Os12g05200
Target Sequence 
GAACCGGCGGGCTCAGTGTCTCGCTTGCCGGCCCTGATGGCCGTGTTGTCGGCGGTGTAGTAGCTGGGATGCTGCGAGCC
GCCAGCCCTATTCAGGTGATTGTGGGGAGCTTCTTGCCCAACAACCTGAAGCAGCATCAGAGAAGAATGGGCCTACATCC
ACAACCATCTGCTGCTCCGGCATTTCCAGCACCGATGGCTCCTCTTCATCCTCCTCCTGTGCTCACAGCTGCGATGCCCA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis