Browse Element(s) Details


Os.20300.1.S1_at

Description gb:AK107470.1
DB_XREF= gi:32992679
TID=Os.20300.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20300 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B03, full insert sequence.
FL= gb:AK107470.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0518011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05130NANA12+2263758..2264336hypothetical protein
LOC_Os12g05137NANA12+2267863..2268350NA
LOC_Os12g05144OsAffx.16036.1.S1_x_at1/1112+2271193..2272370hypothetical protein
LOC_Os12g05144Os.49257.1.S1_x_at1/1112+2271193..2272370hypothetical protein
LOC_Os12g05151NANA12+2272631..2272884hypothetical protein
LOC_Os12g05160OsAffx.19503.1.S1_at11/1112+2280167..2281290Transposable element protein, putative, RnaseH
LOC_Os12g05170NANA12+2285745..2286920expressed protein
LOC_Os12g05180Os.20300.1.S1_at11/1112+2287583..2289545expressed protein
LOC_Os12g05190OsAffx.7487.1.S1_at11/1112+2299628..2300793hypothetical protein
LOC_Os12g05190OsAffx.23706.1.S1_at2/1112+2299628..2300793hypothetical protein
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20300.1.S1_at--493--7991Chr12:2288090..2288114 (25 bp)
GGATGGTTAGCTCCGCTGGCTCACA
LOC_Os12g05180
Os.20300.1.S1_at--589--8311Chr12:2288073..2288097 (25 bp)
GGCTCACAACATGCTGCGATGGCAA
LOC_Os12g05180
Os.20300.1.S1_at--926--2271Chr12:2288025..2288049 (25 bp)
AAATGTTGCGTCGAGCGGTACAGGT
LOC_Os12g05180
Os.20300.1.S1_at--218--7031Chr12:2288008..2288032 (25 bp)
GTACAGGTGTGCTGCTCCTGCAGAC
LOC_Os12g05180
Os.20300.1.S1_at--1064--4051Chr12:2287956..2287980 (25 bp)
CGAGGCTGCCATAGTTGAGCTGCTT
LOC_Os12g05180
Os.20300.1.S1_at--247--7851Chr12:2287762..2287786 (25 bp)
GGTAGCATCAGATTCCCTTTGCTGA
LOC_Os12g05180
Os.20300.1.S1_at--227--211Chr12:2287738..2287762 (25 bp)
ATTTGCTCCTTCAATCCCTACAATT
LOC_Os12g05180
Os.20300.1.S1_at--224--8291Chr12:2287713..2287737 (25 bp)
GGCATTATGACACGCATCTATTCTG
LOC_Os12g05180
Os.20300.1.S1_at--546--3691Chr12:2287696..2287720 (25 bp)
CTATTCTGTAATTGATGCTCCTGCA
LOC_Os12g05180
Os.20300.1.S1_at--213--6351Chr12:2287683..2287707 (25 bp)
GATGCTCCTGCATTTTAGTGTATAA
LOC_Os12g05180
Os.20300.1.S1_at--793--6931Chr12:2287656..2287680 (25 bp)
GTAGGGCAGCTGATCATTTTAATGT
LOC_Os12g05180
Target Sequence 
GGATGGTTAGCTCCGCTGGCTCACAACATGCTGCGATGGCAATCGGAGAGGAATTTCGAGCAGAGAAATGTTGCGTCGAG
CGGTACAGGTGTGCTGCTCCTGCAGACGCTGCATTTTGCTGACCAGAAGAAGAGCGAGGCTGCCATAGTTGAGCTGCTTG
TTGGGTTGAACTACCTGTGGAAAGCTGGAAGAGAGCTTGATGCAAAAGCTAAAAAATTGGTGTCAGGTGGTGGAAAACGC
GATGAATTCACAGATTATTATAGTAGTAATAGGATGGAATGTCGATAAGATGCAACTGAATTGGATGAGCCTGGGATATG
TAAGCAGAGGTAGCATCAGATTCCCTTTGCTGATTTGCTCCTTCAATCCCTACAATTGGCATTATGACACGCATCTATTC
TGTAATTGATGCTCCTGCATTTTAGTGTATAAGTGTAGGGCAGCTGATCATTTTAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis