Browse Element(s) Details


Os.51775.1.S1_x_at

Description gb:AK063680.1
DB_XREF= gi:32973698
TID=Os.51775.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E05, full insert sequence.
FL= gb:AK063680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0521011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05170NANA12+2285745..2286920expressed protein
LOC_Os12g05180Os.20300.1.S1_at11/1112+2287583..2289545expressed protein
LOC_Os12g05190OsAffx.7487.1.S1_at11/1112+2299628..2300793hypothetical protein
LOC_Os12g05190OsAffx.23706.1.S1_at2/1112+2299628..2300793hypothetical protein
LOC_Os12g05200OsAffx.31589.1.S1_s_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.31589.1.S1_at11/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.27256.1.S1_s_at4/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05200OsAffx.25712.1.S1_at2/1112+2304432..2308611DNA-binding family protein, putative, expressed
LOC_Os12g05210Os.51775.1.S1_x_at11/1112+2311451..2312218expressed protein
LOC_Os12g05210Os.51775.1.S1_at11/1112+2311451..2312218expressed protein
LOC_Os12g05220OsAffx.31590.1.S1_at11/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.17852.2.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05220OsAffx.11302.1.S1_at2/1112+2312768..2316461hypothetical protein
LOC_Os12g05230Os.17313.1.S1_at11/1112+2317855..2320808ATP-dependent RNA helicase, putative, expressed
LOC_Os12g05240Os.14491.2.S1_x_at3/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05240Os.47463.1.S1_x_at2/1112+2328057..2329229transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g05250OsAffx.19504.1.S1_at11/1112+2333466..2333743hypothetical protein
LOC_Os12g05260Os.2218.1.S1_at11/1112+2337073..2338158Phytosulfokines 5 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51775.1.S1_x_at--191--4311Chr12:2311619..2311643 (25 bp)
CCTACCGGCGGCGAAGATCGATGAT
LOC_Os12g05210
Os.51775.1.S1_x_at--1073--4051Chr12:2311637..2311661 (25 bp)
CGATGATGTACATGCGCGCGACGCA
LOC_Os12g05210
Os.51775.1.S1_x_at--222--2151Chr12:2311865..2311889 (25 bp)
ACAGCATCGTCGACAGCCAGCTCGA
LOC_Os12g05210
Os.51775.1.S1_x_at--1006--4151Chr12:2312042..2312066 (25 bp)
CGCCGCAGCTGCACGAGAAACTGCA
LOC_Os12g05210
Os.51775.1.S1_x_at--710--9031Chr12:2312051..2312075 (25 bp)
TGCACGAGAAACTGCAGCTGCAGCC
LOC_Os12g05210
Os.51775.1.S1_x_at--992--4351Chr12:2312089..2312113 (25 bp)
CCAGCCGCCATTTGAGTGGTGTTTT
LOC_Os12g05210
Os.51775.1.S1_x_at--741--7491Chr12:2312104..2312128 (25 bp)
GTGGTGTTTTCGAAGTGTGTTTGTT
LOC_Os12g05210
Os.51775.1.S1_x_at--907--11Chr12:2312146..2312170 (25 bp)
ATTTACGGTTTTGTATGCGTGTTAT
LOC_Os12g05210
Os.51775.1.S1_x_at--1083--4651Chr12:2312162..2312186 (25 bp)
GCGTGTTATTTATGCCTCTGTATGA
LOC_Os12g05210
Os.51775.1.S1_x_at--734--591Chr12:2312173..2312197 (25 bp)
ATGCCTCTGTATGAATAATAATCGA
LOC_Os12g05210
Os.51775.1.S1_x_at--185--531Chr12:2312193..2312217 (25 bp)
ATCGAGCATCAAACTGAACTTGGAT
LOC_Os12g05210
Target Sequence 
CCTACCGGCGGCGAAGATCGATGATGTACATGCGCGCGACGCACCGGGACGAGGAGGGGAAGAAGGTGACGGAGAAGGTG
GCGGTGCCGGAGACGCGGCACCCGGACACGGCCAGGCACTTCGAGCGGAAGCTGGACCAGCAGGGGCTCCACCGCATGGA
GCGCCACCCGGCGAACGGCTCCCGCGGCATCGGCGCGCCGCCGCCCAAGTCCGGCCGCGGCGGCAAGTTCACCTGGGAGG
GCCCCGACAGCATCGTCGACAGCCAGCTCGATCCCCTCCCGGCCGCCATCGACCGCAACGACCCCAACTACGAGGAGGAG
GAAGGCGACCACGAGCGCGAGGCCGACGTCGTCGGCGAGGTGGAGGTCGCCAAGGTCGCCGGCGACGCCAGGGATGGTGT
CGCCAGGGTCGACGTCGTCGCGCCGCCGCAGCTGCACGAGAAACTGCAGCTGCAGCCGCAGTAGGGGCGCCCAGCCGCCA
TTTGAGTGGTGTTTTCGAAGTGTGTTTGTTACTTTGTTTGAGTGTTTATTTACGGTTTTGTATGCGTGTTATTTATGCCT
CTGTATGAATAATAATCGAGCATCAAACTGAACTTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51775.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis